Alternatives and similar repositories for ProteinLM

Users that are interested in ProteinLM are comparing it to the libraries listed below

• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 10 months ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆50Updated 3 years ago
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆113Updated 3 years ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• fusong-ju / ProFOLD
  A protein 3D structure prediction application
  ☆66Updated 4 years ago
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆82Updated 3 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆102Updated 10 months ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆161Updated 3 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆139Updated last year
• IBM / controlled-peptide-generation
  source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…
  ☆103Updated 2 years ago
• BioinfoMachineLearning / DeepInteract
  A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)
  ☆64Updated 3 years ago
• zjunlp / OntoProtein
  [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
  ☆149Updated 4 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆159Updated 10 months ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆160Updated last year
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆58Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• jonathanking / protein-transformer
  Predicting protein structure through sequence modeling
  ☆111Updated 5 years ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆83Updated 3 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆148Updated 4 years ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆33Updated 2 years ago
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆92Updated 2 years ago
• DeepRank / deeprank
  This repository has been integrated in https://github.com/DeepRank/deeprank2
  ☆146Updated last year
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆113Updated last year
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆64Updated 3 years ago
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆159Updated 2 years ago
• biomap-research / xTrimoMultimer
  ☆77Updated 2 years ago
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆42Updated 2 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 2 months ago