THUDM / ProteinLM
Protein Language Model
☆114Updated last year
Alternatives and similar repositories for ProteinLM:
Users that are interested in ProteinLM are comparing it to the libraries listed below
- ☆126Updated 2 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆61Updated 3 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 3 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆87Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆146Updated last year
- Predicting protein structure through sequence modeling☆110Updated 4 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆131Updated 3 years ago
- open source repository☆131Updated last year
- ☆75Updated 2 years ago
- The first large protein language model trained follows structure instructions.☆73Updated 7 months ago
- trRosetta for protein design☆177Updated 3 years ago
- A protein 3D structure prediction application☆65Updated 3 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆110Updated 3 years ago
- Attempt at reproduction of AlphaFold2☆91Updated 2 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆84Updated last year
- Code for Fold2Seq paper from ICML 2021☆50Updated 2 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆109Updated 9 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆174Updated 8 months ago
- ☆39Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆214Updated 8 months ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)☆63Updated 2 years ago
- Generative Language Modeling for Antibody Design☆135Updated 3 months ago
- A package to predict protein inter-residue geometries from sequence data☆211Updated 3 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆138Updated 6 months ago
- Implementation of ProteinBERT in Pytorch☆155Updated 3 years ago