Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
☆89Jun 18, 2021Updated 4 years ago
Alternatives and similar repositories for DeepAccNet
Users that are interested in DeepAccNet are comparing it to the libraries listed below
Sorting:
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆117Dec 7, 2022Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Protein quality assessment using Graph Convolutional Networks☆28Oct 11, 2022Updated 3 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54May 2, 2022Updated 3 years ago
- ☆97Oct 15, 2024Updated last year
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- trRosetta for protein design☆184May 15, 2021Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 6 months ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- ☆37Dec 21, 2023Updated 2 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16May 2, 2021Updated 4 years ago
- ☆11May 16, 2020Updated 5 years ago
- protein docking stuff☆52Sep 2, 2024Updated last year
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- C-library for calculating Solvent Accessible Surface Areas☆178Nov 15, 2025Updated 3 months ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Scripts and data deposition for de novo heterodimers manuscript☆11Dec 15, 2018Updated 7 years ago
- Protein Origami via Genetic Fusions☆17Sep 19, 2022Updated 3 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆163May 1, 2021Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆99Oct 23, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- A Python Package for Protein Dynamics Analysis☆529Feb 13, 2026Updated 2 weeks ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 7 months ago
- OmegaFold Release Code☆612Dec 12, 2022Updated 3 years ago
- ☆12Dec 2, 2024Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated 11 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Nov 21, 2025Updated 3 months ago
- ☆241May 22, 2023Updated 2 years ago
- protein structure generation with sparse all-atom denoising models☆60Updated this week
- Weighted Ensemble Data Analysis and Plotting☆26Dec 11, 2025Updated 2 months ago