Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
☆49Jan 24, 2022Updated 4 years ago
Alternatives and similar repositories for IEConv_proteins
Users that are interested in IEConv_proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆49Jun 30, 2023Updated 2 years ago
- ☆244May 22, 2023Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆317Jun 13, 2025Updated 9 months ago
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆256Sep 22, 2023Updated 2 years ago
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆72Jul 19, 2024Updated last year
- Open source code for TankBind. Galixir Tenchnologies☆177Nov 1, 2023Updated 2 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- ☆65Sep 14, 2023Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆319Nov 15, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆737Jun 19, 2024Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 4 years ago
- ☆51May 10, 2023Updated 2 years ago
- ☆12Dec 2, 2024Updated last year
- A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.☆105Feb 25, 2021Updated 5 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Jun 8, 2021Updated 4 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆96Jun 14, 2025Updated 9 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆117Mar 3, 2026Updated 3 weeks ago
- ☆65Jun 14, 2025Updated 9 months ago
- ☆109Apr 1, 2023Updated 2 years ago
- ☆12Nov 16, 2023Updated 2 years ago
- ☆166Mar 14, 2024Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 11 months ago
- OnionNet-2 is constructed based on convolutional neural network (CNN) to predict the protein-ligand binding affinity.☆24Mar 2, 2024Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Aug 3, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Mar 24, 2021Updated 5 years ago
- ☆130Sep 5, 2022Updated 3 years ago
- Integrated physics-based and ligand-based modeling.☆70Oct 27, 2025Updated 5 months ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆541Feb 19, 2025Updated last year
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆35Aug 17, 2023Updated 2 years ago
- Energy-based models for atomic-resolution protein conformations☆103Mar 22, 2022Updated 4 years ago
- [Neurips 2025] Official Implementation of ConfRover models☆22Feb 3, 2026Updated last month