zjunlp / OntoProtein
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
☆146Updated last month
Alternatives and similar repositories for OntoProtein:
Users that are interested in OntoProtein are comparing it to the libraries listed below
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆95Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆64Updated 6 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆45Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆89Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆75Updated 3 months ago
- Must-read papers on NLP for science.☆57Updated last year
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆284Updated last year
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024☆26Updated 5 months ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆120Updated last year
- ☆128Updated 2 years ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆111Updated 7 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆202Updated 5 months ago
- [ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback☆155Updated 3 months ago
- The first large protein language model trained follows structure instructions.☆78Updated 10 months ago
- Implementation of ProteinBERT in Pytorch☆157Updated 3 years ago
- MSAGPT☆30Updated 4 months ago
- ☆84Updated 2 years ago
- ☆40Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆151Updated last year
- Associated Repository for "Translation between Molecules and Natural Language"☆174Updated last year
- This repo is for the Open Protein Instructions (OPI) project, aiming to build and release a high-quality and comprehensive protein instru…☆4Updated 2 weeks ago
- Generative Language Modeling for Antibody Design☆146Updated 6 months ago
- SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)☆52Updated 10 months ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆109Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆232Updated last month
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆50Updated last year
- ☆38Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- ☆53Updated this week