dmis-lab / tbinetLinks
TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism
☆25Updated 4 years ago
Alternatives and similar repositories for tbinet
Users that are interested in tbinet are comparing it to the libraries listed below
Sorting:
- Implementation of ReSimNet for drug response similarity prediction☆40Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- MHC-peptide class II interaction prediction, binding, presentation☆21Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 4 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated last year
- ☆11Updated 5 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 7 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- ☆23Updated 2 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- ☆17Updated 8 months ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆20Updated 3 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer☆10Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 5 months ago
- ☆22Updated 2 years ago
- Supplementary data for the ACME algorithm☆23Updated 2 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆30Updated 3 years ago
- Paratope Prediction using Deep Learning☆59Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Updated 5 years ago
- ☆34Updated last year
- ☆13Updated 3 years ago
- ☆66Updated last year
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated last month
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 3 months ago
- ☆14Updated 7 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago