BERN2: an advanced neural biomedical namedentity recognition and normalization tool
☆205Mar 28, 2024Updated 2 years ago
Alternatives and similar repositories for BERN2
Users that are interested in BERN2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆184Jul 7, 2023Updated 3 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- Sequence Tagging for Biomedical Extractive Question Answering (Bioinformatics'2020)☆10Jul 3, 2023Updated 3 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Mar 9, 2023Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆54Jun 29, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning from Negative samples for Biomedical Generative Entity Linking☆18May 25, 2025Updated last year
- Bioformer: an efficient BERT model for biomedical text mining☆56Feb 7, 2023Updated 3 years ago
- Simple Questions Generate Named Entity Recognition Datasets (EMNLP 2022)☆75Apr 10, 2023Updated 3 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆164Jul 29, 2021Updated 4 years ago
- ☆59Nov 15, 2020Updated 5 years ago
- ☆20Sep 28, 2021Updated 4 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Jan 27, 2024Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- ☆11Apr 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,199Aug 13, 2023Updated 2 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- FaVIQ: Fact Verification from Information-seeking Questions☆43Nov 23, 2022Updated 3 years ago
- A full-text article retrieval pipeline for biomedical literature.☆23Jul 9, 2026Updated last week
- Tools for curating biomedical training data for large-scale language modeling☆506Dec 9, 2024Updated last year
- Bioinformatics'2023: Consistency Enhancement of Model Prediction on Document-level Named Entity Recognition☆13Jun 8, 2023Updated 3 years ago
- MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integra…☆10Jun 20, 2024Updated 2 years ago
- ☆15Aug 24, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Jul 12, 2021Updated 5 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- ☆35Jun 26, 2023Updated 3 years ago
- PyTorch Implementation of BioBERT☆350Jun 24, 2023Updated 3 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 3 months ago
- OLAPH: Improving Factuality in Biomedical Long-form Question Answering☆37Sep 10, 2024Updated last year
- ☆31Feb 23, 2024Updated 2 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Apr 27, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆457Apr 5, 2022Updated 4 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆597Mar 25, 2023Updated 3 years ago
- AIONER☆70Jul 25, 2024Updated last year
- EMNLP'2020: Look at the First Sentence: Position Bias in Question Answering☆29Nov 4, 2020Updated 5 years ago
- ☆47May 17, 2025Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆76Jun 3, 2026Updated last month