Alternatives and similar repositories for BERN2

Users that are interested in BERN2 are comparing it to the libraries listed below

• librairy / bio-ner
  Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…
  ☆115Updated 3 years ago
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆178Updated 3 years ago
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆164Updated last year
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆187Updated 2 years ago
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆86Updated 2 months ago
• ncbi / AIONER
  AIONER
  ☆54Updated 9 months ago
• dmis-lab / KAZU-NER-module
  EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework
  ☆10Updated 8 months ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 3 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆326Updated last year
• ncbi / BioRED
  ☆24Updated last year
• justinphan3110 / SciFive
  SciFive: a text-text transformer model for biomedical literature
  ☆94Updated 11 months ago
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆160Updated 3 years ago
• lasigeBioTM / BENT
  Biomedical Term Annotator
  ☆9Updated 2 months ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆54Updated 2 years ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆477Updated 5 months ago
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆118Updated 3 months ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆13Updated 5 months ago
• dreji18 / Bio-Epidemiology-NER
  Recognize bio-medical entities from a text corpus
  ☆120Updated last year
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated last month
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• ncbi / bert_gt
  ☆32Updated last year
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆20Updated 2 months ago
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆127Updated last year
• jind11 / PubMed-PICO-Detection
  PubMed PICO Element Detection Dataset
  ☆56Updated 6 years ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆39Updated last week
• MindRank-Biotech / PharmKG
  ☆55Updated 4 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆326Updated 3 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago