gyorilab / gilda
Grounding of biomedical named entities with contextual disambiguation
β43Updated 4 months ago
Alternatives and similar repositories for gilda:
Users that are interested in gilda are comparing it to the libraries listed below
- β24Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.β31Updated last year
- π A Python package for using ontologies, terminologies, and biomedical nomenclaturesβ62Updated last week
- a module to calculate the MeSH similarityβ26Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyβ40Updated 11 months ago
- a module to calculate the MeSH similarityβ25Updated 3 years ago
- NetworkX-based Python library for representing ontologiesβ85Updated last year
- Biomedical Entity Linking Benchmarkβ11Updated 3 months ago
- Retrieve and process PubTator annotationsβ44Updated last year
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β51Updated last month
- β22Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- Bio relation extraction labeled datasetβ44Updated 2 years ago
- β65Updated 2 years ago
- AIONERβ52Updated 7 months ago
- Python library for working with BioC filesβ13Updated 6 years ago
- Text annotation tool for team collaborationβ40Updated last year
- PhenoTaggerβ55Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- πͺ What's the latest version for each database?β27Updated this week
- Biomedical Term Annotatorβ9Updated 3 weeks ago
- Tool for disambiguating acronyms and abbreviations in text for NLP applicationsβ22Updated 9 months ago
- Python library for work with BioCreative filesβ13Updated 6 years ago
- Public release of the DeepPhe analytic softwareβ30Updated 2 years ago
- A full-text article retrieval pipeline for biomedical literature.β20Updated last week
- KGX is a Python library for exchanging Knowledge Graphsβ118Updated 2 months ago
- A Silver Standard Corpus of Human Phenotype-Gene Relationsβ13Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- Fast, world class biomedical NERβ85Updated 2 weeks ago