gyorilab / gilda
Grounding of biomedical named entities with contextual disambiguation
β41Updated 3 months ago
Alternatives and similar repositories for gilda:
Users that are interested in gilda are comparing it to the libraries listed below
- β24Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.β31Updated last year
- π A Python package for using ontologies, terminologies, and biomedical nomenclaturesβ62Updated this week
- a module to calculate the MeSH similarityβ24Updated 3 years ago
- a module to calculate the MeSH similarityβ25Updated 3 years ago
- Retrieve and process PubTator annotationsβ44Updated last year
- NetworkX-based Python library for representing ontologiesβ84Updated last year
- β65Updated 2 years ago
- Python library for working with BioC filesβ13Updated 6 years ago
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β51Updated this week
- Biomedical Entity Linking Benchmarkβ11Updated 2 months ago
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- PhenoTaggerβ55Updated last year
- AIONERβ48Updated 6 months ago
- A framework for keeping biomedical text mining result up-to-dateβ41Updated 4 years ago
- β22Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyβ38Updated 10 months ago
- Fast, world class biomedical NERβ81Updated last month
- Bio relation extraction labeled datasetβ43Updated 2 years ago
- πͺ What's the latest version for each database?β27Updated this week
- Public release of the DeepPhe analytic softwareβ30Updated 2 years ago
- Python library for work with BioCreative filesβ13Updated 6 years ago
- Tool that converts between BioC XML files and BioC JSON filesβ16Updated 8 years ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)β40Updated this week
- Text annotation tool for team collaborationβ40Updated last year
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- Ontology cross-reference and mapping serviceβ18Updated 7 months ago
- A convolutional neural network model for relation extraction.β13Updated last year
- Biomedical Term Annotatorβ9Updated 5 months ago