Grounding of biomedical named entities with contextual disambiguation
โ54Jun 29, 2026Updated 2 months ago
Alternatives and similar repositories for gilda
Users that are interested in gilda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ66Updated this week
- Tool for disambiguating acronyms and abbreviations in text for NLP applicationsโ22Mar 26, 2026Updated 5 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automaticallyโ43Jun 19, 2026Updated 2 months ago
- NetworkX-based Python library for representing ontologiesโ95Jul 12, 2023Updated 3 years ago
- ๐ช What's the latest version for each database?โ31Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ76Updated this week
- A vocabulary about the processes, entities, and agents involved in the curation of semantic mappingsโ17Jun 10, 2026Updated 2 months ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ26Aug 11, 2026Updated 2 weeks ago
- a tool for mapping free-text descriptions of entities to ontology termsโ26Jul 30, 2024Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization toolโ205Mar 28, 2024Updated 2 years ago
- Ten quick tips to finish that manuscript that's 90% complete.โ13Mar 30, 2022Updated 4 years ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ194Aug 21, 2026Updated last week
- Schema and generated objects for biolink data model and upper ontologyโ260Updated this week
- Python toolkit for SSSOM mapping formatโ64Updated this week
- Managed hosting for WordPress and PHP on Cloudways โข AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.โ26Oct 23, 2025Updated 10 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.โ79Jun 3, 2026Updated 2 months ago
- ๐ Generation and Applications of Knowledge Graphs in Systems and Networks Biologyโ33Dec 16, 2019Updated 6 years ago
- python library for working with ontologies and ontology associationsโ133Feb 11, 2025Updated last year
- import information (affiliation, education) from ORCID database to Wikidata regarding authors of scientific papersโ16May 25, 2023Updated 3 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ34Mar 19, 2024Updated 2 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph dataโ34Mar 3, 2023Updated 3 years ago
- ๐ฃ๏ธ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappingsโ16Aug 13, 2026Updated 2 weeks ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ20Jul 9, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean โข AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Data structures and code to read/write BioC XML and Json.โ34Aug 21, 2023Updated 3 years ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ149Updated this week
- Mondo Disease Ontologyโ321Updated this week
- Open Targets Library ETL Pipeline | Apache Beamโ16May 5, 2021Updated 5 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.โ18Mar 26, 2026Updated 5 months ago
- โ82Aug 12, 2026Updated 2 weeks ago
- โ15Aug 24, 2022Updated 4 years ago
- Reach Biomedical Information Extractionโ99Aug 8, 2026Updated 3 weeks ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embeddingโ14Oct 17, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python library (C++ backend) for degree-preserving network randomizationโ14Oct 14, 2019Updated 6 years ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ122Aug 6, 2026Updated 3 weeks ago
- โ13Jul 5, 2026Updated last month
- The Ontology for Biomedical Investigationsโ105Aug 10, 2026Updated 2 weeks ago
- Subset selection / data pruning for weak supervisionโ17Jun 21, 2023Updated 3 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methodsโ13Mar 2, 2021Updated 5 years ago
- OBO-formatted ontologies โ networkx (Python 3)โ157Jun 3, 2026Updated 2 months ago