Grounding of biomedical named entities with contextual disambiguation
☆52Mar 30, 2026Updated last month
Alternatives and similar repositories for gilda
Users that are interested in gilda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆62May 2, 2026Updated last week
- Tool for disambiguating acronyms and abbreviations in text for NLP applications☆22Mar 26, 2026Updated last month
- NetworkX-based Python library for representing ontologies☆95Jul 12, 2023Updated 2 years ago
- 🪝 What's the latest version for each database?☆29Updated this week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆77Updated this week
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆204Mar 28, 2024Updated 2 years ago
- CascadER: Cross-Modal Cascading for Knowledge Graph Link Prediction (arXiv 22)☆13Jun 17, 2022Updated 3 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated this week
- a tool for mapping free-text descriptions of entities to ontology terms☆25Jul 30, 2024Updated last year
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Schema and generated objects for biolink data model and upper ontology☆235Apr 29, 2026Updated last week
- Ontology Access Kit: A python library and command line application for working with ontologies☆167Apr 13, 2026Updated 3 weeks ago
- A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.☆27Oct 23, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python toolkit for SSSOM mapping format☆62May 4, 2026Updated last week
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆27Apr 29, 2026Updated last week
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- import information (affiliation, education) from ORCID database to Wikidata regarding authors of scientific papers☆16May 25, 2023Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- A unifying framework for biomedical research knowledge graphs☆303Updated this week
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆144Updated this week
- A crate for working with genomics chain files.☆14Mar 19, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆19Mar 2, 2026Updated 2 months ago
- KGX is a Python library for exchanging Knowledge Graphs☆140Apr 30, 2026Updated last week
- Open Targets Library ETL Pipeline | Apache Beam☆16May 5, 2021Updated 5 years ago
- ☆77Dec 20, 2023Updated 2 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated last month
- ☆15Aug 24, 2022Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Reach Biomedical Information Extraction☆98Nov 28, 2024Updated last year
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Apr 23, 2026Updated 2 weeks ago
- The Ontology for Biomedical Investigations☆102Updated this week
- Subset selection / data pruning for weak supervision☆16Jun 21, 2023Updated 2 years ago
- OBO-formatted ontologies → networkx (Python 3)☆151Mar 26, 2025Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- LLM-driven curation assist tool☆107Oct 20, 2025Updated 6 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆53Mar 20, 2024Updated 2 years ago