Grounding of biomedical named entities with contextual disambiguation
☆52Mar 30, 2026Updated 2 months ago
Alternatives and similar repositories for gilda
Users that are interested in gilda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆63May 21, 2026Updated last week
- Tool for disambiguating acronyms and abbreviations in text for NLP applications☆22Mar 26, 2026Updated 2 months ago
- 👜 Easily pick a place to store data for your Python code.☆42May 20, 2026Updated last week
- NetworkX-based Python library for representing ontologies☆95Jul 12, 2023Updated 2 years ago
- 🪝 What's the latest version for each database?☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Apr 2, 2024Updated 2 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆76May 21, 2026Updated last week
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- CascadER: Cross-Modal Cascading for Knowledge Graph Link Prediction (arXiv 22)☆13Jun 17, 2022Updated 3 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24May 19, 2026Updated last week
- a tool for mapping free-text descriptions of entities to ontology terms☆26Jul 30, 2024Updated last year
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆170May 12, 2026Updated 2 weeks ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆75Apr 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.☆27Oct 23, 2025Updated 7 months ago
- Python toolkit for SSSOM mapping format☆62Updated this week
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆27May 7, 2026Updated 3 weeks ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆33Dec 16, 2019Updated 6 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- import information (affiliation, education) from ORCID database to Wikidata regarding authors of scientific papers☆16May 25, 2023Updated 3 years ago
- python library for working with ontologies and ontology associations☆133Feb 11, 2025Updated last year
- Multimodal Transformers for biomedical text and Knowledge Graph data☆33Mar 3, 2023Updated 3 years ago
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A unifying framework for biomedical research knowledge graphs☆306Updated this week
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆143Updated this week
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated 2 months ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…☆19May 22, 2026Updated last week
- Mondo Disease Ontology☆302May 23, 2026Updated last week
- KGX is a Python library for exchanging Knowledge Graphs☆140Updated this week
- Open Targets Library ETL Pipeline | Apache Beam☆16May 5, 2021Updated 5 years ago
- ☆79Dec 20, 2023Updated 2 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Aug 24, 2022Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Reach Biomedical Information Extraction☆99Nov 28, 2024Updated last year
- ☆13Updated this week
- The Ontology for Biomedical Investigations☆102May 19, 2026Updated last week
- Subset selection / data pruning for weak supervision☆16Jun 21, 2023Updated 2 years ago