Tools for curating biomedical training data for large-scale language modeling
☆502Dec 9, 2024Updated last year
Alternatives and similar repositories for biomedical
Users that are interested in biomedical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆32Dec 28, 2024Updated last year
- Search the biomedical literature for protein interactions and protein associations☆11Nov 24, 2023Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆164Jul 29, 2021Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆298Jan 12, 2022Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆345Nov 9, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Biomedical Entity Linking Benchmark☆14Dec 10, 2024Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆454Apr 5, 2022Updated 4 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆596Mar 25, 2023Updated 3 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Mar 9, 2023Updated 3 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆56Feb 7, 2023Updated 3 years ago
- Data structures and code to read/write BioC XML and Json.☆34Aug 21, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆264Mar 24, 2024Updated 2 years ago
- ☆64Jul 4, 2023Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆53Jun 11, 2026Updated 2 weeks ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆231Apr 28, 2023Updated 3 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,970Dec 4, 2025Updated 6 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Jul 12, 2021Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆182Jul 7, 2023Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Jun 28, 2022Updated 4 years ago
- System for Medical Concept Extraction and Linking☆445Aug 12, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆57May 26, 2023Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆286Oct 18, 2023Updated 2 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- ☆25Jan 15, 2024Updated 2 years ago
- Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems☆317Oct 17, 2023Updated 2 years ago
- ☆72May 31, 2022Updated 4 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated last year
- Fast, world class biomedical NER☆91Mar 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated 11 months ago
- ☆641Aug 20, 2023Updated 2 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Jan 27, 2024Updated 2 years ago
- Library for clinical NLP with spaCy.☆666Jun 4, 2026Updated 3 weeks ago
- ☆4,489Jul 25, 2024Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Mar 29, 2022Updated 4 years ago
- ☆20Mar 5, 2024Updated 2 years ago