bigscience-workshop / biomedicalLinks
Tools for curating biomedical training data for large-scale language modeling
β485Updated 11 months ago
Alternatives and similar repositories for biomedical
Users that are interested in biomedical are comparing it to the libraries listed below
Sorting:
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.β162Updated 4 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model π Pretrained with Document Linksβ448Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithmsβ154Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.β209Updated 2 years ago
- Recognize bio-medical entities from a text corpusβ128Updated 2 years ago
- SciFive: a text-text transformer model for biomedical literatureβ98Updated last year
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medicβ¦β279Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization toolβ200Updated last year
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).β581Updated 2 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRAβ37Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]β79Updated 3 years ago
- PyTorch Implementation of BioBERTβ345Updated 2 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Modelsβ73Updated 2 years ago
- Medical Concept Annotation Toolβ511Updated 3 months ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.β296Updated 3 years ago
- PubMedQA: A Dataset for Biomedical Research Question Answeringβ383Updated 2 years ago
- β635Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.β341Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalizationβ175Updated 2 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-theβ¦β122Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generationβ84Updated 5 months ago
- all scripts used in gatortron projectβ126Updated 2 years ago
- A collection of papers on automated medical coding from free-textsβ149Updated 11 months ago
- auto icd coding with promptβ50Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integrationβ96Updated last year
- β152Updated last year
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β430Updated 3 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]β53Updated 3 years ago
- A project for developing transformer-based models for clinical relation extractionβ130Updated 2 years ago
- Clinical text summarization by adapting large language modelsβ149Updated last year