bigscience-workshop / biomedicalLinks
Tools for curating biomedical training data for large-scale language modeling
☆481Updated 7 months ago
Alternatives and similar repositories for biomedical
Users that are interested in biomedical are comparing it to the libraries listed below
Sorting:
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆161Updated 3 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆439Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆149Updated last year
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆274Updated last year
- Recognize bio-medical entities from a text corpus☆125Updated last year
- PubMedQA: A Dataset for Biomedical Research Question Answering☆346Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆190Updated last year
- SciFive: a text-text transformer model for biomedical literature☆96Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆194Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆573Updated 2 years ago
- Medical Concept Annotation Tool☆503Updated last week
- ☆632Updated last year
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 3 years ago
- PyTorch Implementation of BioBERT☆332Updated 2 years ago
- all scripts used in gatortron project☆121Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆116Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆169Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆330Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆145Updated 6 months ago
- Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems☆297Updated last year
- ☆152Updated last year
- Fast, world class biomedical NER☆87Updated 4 months ago
- Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites☆404Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Updated 3 years ago
- Biomedical Question Answering Datasets.☆112Updated 2 months ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆422Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆129Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆53Updated 2 years ago