bigscience-workshop / biomedicalLinks
Tools for curating biomedical training data for large-scale language modeling
☆488Updated last year
Alternatives and similar repositories for biomedical
Users that are interested in biomedical are comparing it to the libraries listed below
Sorting:
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆449Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆281Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆154Updated 2 years ago
- SciFive: a text-text transformer model for biomedical literature☆98Updated last year
- Recognize bio-medical entities from a text corpus☆130Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆586Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆213Updated 2 years ago
- PyTorch Implementation of BioBERT☆348Updated 2 years ago
- Medical Concept Annotation Tool☆519Updated 5 months ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆123Updated 4 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- all scripts used in gatortron project☆130Updated 2 years ago
- PubMedQA: A Dataset for Biomedical Research Question Answering☆399Updated 2 years ago
- ☆636Updated 2 years ago
- A collection of papers on automated medical coding from free-texts☆151Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84Updated 7 months ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆76Updated 2 years ago
- Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites☆434Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆178Updated 2 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆98Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Updated 4 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- Fast, world class biomedical NER☆87Updated 10 months ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆54Updated 3 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆435Updated 3 years ago
- Clinical text summarization by adapting large language models☆155Updated last year
- Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems☆312Updated 2 years ago