bigscience-workshop / biomedical
Tools for curating biomedical training data for large-scale language modeling
☆477Updated 4 months ago
Alternatives and similar repositories for biomedical:
Users that are interested in biomedical are comparing it to the libraries listed below
- PyTorch Implementation of BioBERT☆325Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆159Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆437Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆571Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆293Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆270Updated last year
- PubMedQA: A Dataset for Biomedical Research Question Answering☆311Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆186Updated last year
- Recognize bio-medical entities from a text corpus☆120Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆326Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- all scripts used in gatortron project☆116Updated last year
- SciFive: a text-text transformer model for biomedical literature☆94Updated 10 months ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆413Updated 2 years ago
- ☆627Updated last year
- Medical Concept Annotation Tool☆486Updated last week
- Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems☆287Updated last year
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆66Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆94Updated 8 months ago
- ☆98Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Fast, world class biomedical NER☆86Updated last month
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆114Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆122Updated 2 years ago