BioMedBERT / biomedbert
BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR
☆27Updated 4 years ago
Alternatives and similar repositories for biomedbert:
Users that are interested in biomedbert are comparing it to the libraries listed below
- ☆33Updated last year
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- ☆49Updated 2 years ago
- ☆25Updated last year
- AIONER☆52Updated 7 months ago
- Biomedical Entity Linking Benchmark☆11Updated 3 months ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆65Updated 10 months ago
- PMC-Patients☆92Updated 9 months ago
- Bio relation extraction labeled dataset☆44Updated 2 years ago
- Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision☆22Updated 11 months ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆56Updated 2 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆85Updated 7 months ago
- A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, pred…☆12Updated 3 years ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆21Updated this week
- ISMB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"☆54Updated 11 months ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆36Updated 4 years ago
- EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning☆28Updated last year
- Processing SIDER 4.1: the side effect resource☆21Updated 9 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- A repo for REMOD: relation extraction algorithm based on multimodality knowledge distillation☆28Updated 3 years ago
- ☆55Updated 4 years ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆61Updated last year
- ☆32Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆33Updated 2 years ago
- Code repository to create the MIMIC-CDM Dataset.☆27Updated last month
- Implements ChatGPT API via request package.☆45Updated last year
- ☆66Updated last year