Alternatives and similar repositories for biomedbert

Users that are interested in biomedbert are comparing it to the libraries listed below

• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• NtaylorOX / Public_Clinical_Prompt
  ☆49Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• dmis-lab / self-biorag
  [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models
  ☆64Updated last year
• stonkgs / stonkgs
  Multimodal Transformers for biomedical text and Knowledge Graph data
  ☆34Updated 2 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• dmis-lab / BioLAMA
  EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?
  ☆57Updated 2 years ago
• RyanWangZf / PromptEHR
  EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning
  ☆30Updated 2 years ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆14Updated last year
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆201Updated last year
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆72Updated last year
• zhao-zy15 / PMC-Patients
  PMC-Patients
  ☆102Updated last year
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆20Updated 2 years ago
• lindvalllab / clinicalXLNet
  Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
  ☆49Updated 4 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• starmpcc / CAMEL
  Clinically Adapted Model Enhanced from LLaMA
  ☆88Updated 2 years ago
• insilicomedicine / Fair-Evaluation-BERT
  ☆20Updated 4 years ago
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆57Updated 2 years ago
• junwoopark92 / mimic-sparql
  "Knowledge Graph-based Question Answering with Electronic Health Records", accepted at Machine Learning for Health Care (MLHC) 2021
  ☆38Updated last year
• hoon9405 / DescEmb
  DescEmb - Unifying Heterogenous Electronic Health Records Systems via Text-Based Code Embedding
  ☆22Updated 7 months ago
• yhydhx / ChatGPT-API
  Implements ChatGPT API via request package.
  ☆47Updated 2 years ago
• Alibaba-NLP / EBM-Net
  Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".
  ☆14Updated 4 years ago
• zhehengluoK / Biomedical-Text-Summarization-Survey
  This repository lists papers, codes, and datasets in Biomedical Text Summarisation based on PLM
  ☆23Updated 3 years ago
• abachaa / MEDIQA-Chat-2023
  MEDIQA-Chat Shared Tasks @ ACL-ClinicalNLP 2023
  ☆53Updated 2 years ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• kamalkraj / BioELECTRA
  BioELECTRA
  ☆50Updated 4 years ago