Alternatives and similar repositories for bioc

Users that are interested in bioc are comparing it to the libraries listed below

• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆18Updated 8 years ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 7 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆44Updated 2 months ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated last month
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• ncbi / AIONER
  AIONER
  ☆61Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• Aitslab / EasyNER
  a customzable pipeline for information extraction
  ☆17Updated 4 months ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆56Updated 2 years ago
• ncbi-nlp / TeamTat
  Text annotation tool for team collaboration
  ☆42Updated last year
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 7 months ago
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆27Updated last year
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆61Updated 2 months ago
• lasigeBioTM / IHP
  Identification of Human Phenotype Entities
  ☆11Updated 6 years ago
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆59Updated last year
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆87Updated 7 months ago
• ncbi / BioRED
  ☆28Updated 2 years ago
• BaderLab / Towards-reliable-BioNER
  This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…
  ☆15Updated 6 years ago
• UCDenver-ccp / CRAFT
  ☆74Updated last year