bionlplab / biocLinks
Data structures and code to read/write BioC XML and Json.
☆32Updated 2 years ago
Alternatives and similar repositories for bioc
Users that are interested in bioc are comparing it to the libraries listed below
Sorting:
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last month
- Tool that converts between BioC XML files and BioC JSON files☆17Updated 8 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated this week
- Python library for working with BioC files☆13Updated 7 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- ☆69Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- AIONER☆59Updated last year
- ☆55Updated 5 years ago
- ☆24Updated 4 years ago
- ☆41Updated 5 years ago
- Text annotation tool for team collaboration☆42Updated last year
- ☆28Updated 2 years ago
- ☆73Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 6 months ago
- Repository for student projects within biomedical text mining from Lund University☆55Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- a customzable pipeline for information extraction☆17Updated 3 months ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Updated last year
- Fast, world class biomedical NER☆87Updated 5 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- PhenoTagger☆58Updated last year
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- A full-text article retrieval pipeline for biomedical literature.☆21Updated this week