bionlplab / biocLinks
Data structures and code to read/write BioC XML and Json.
☆33Updated 2 years ago
Alternatives and similar repositories for bioc
Users that are interested in bioc are comparing it to the libraries listed below
Sorting:
- Python library for working with BioC files☆13Updated 7 years ago
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 9 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆46Updated last week
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated last month
- ☆70Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆24Updated 5 years ago
- AIONER☆62Updated last year
- ☆42Updated 5 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 6 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 10 months ago
- ☆55Updated 5 years ago
- Text annotation tool for team collaboration☆43Updated 2 years ago
- A near real-time named-entity recognizer☆63Updated this week
- Repository for student projects within biomedical text mining from Lund University☆57Updated 2 years ago
- ☆24Updated 2 years ago
- PhenoTagger☆64Updated last year
- ☆29Updated 2 years ago
- a customzable pipeline for information extraction☆18Updated 7 months ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year