Alternatives and similar repositories for pubmedkb_core

Users that are interested in pubmedkb_core are comparing it to the libraries listed below

• ncbi / BioConceptVec
  ☆42Updated 5 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆56Updated 2 years ago
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• ncbi-nlp / pubtator-gpt
  ☆31Updated last year
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 2 years ago
• ncbi / GNorm2
  ☆25Updated last year
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆16Updated 5 years ago
• MindRank-Biotech / PharmKG
  ☆58Updated 4 years ago
• insilicomedicine / Fair-Evaluation-BERT
  ☆20Updated 4 years ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated 2 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• Case-esaC / iDrug
  ☆20Updated 5 years ago
• soultoolman / pubmed-mapper
  PubMed Mapper: A Python library that map PubMed XML to Python object
  ☆46Updated 2 years ago
• ncbi / BioREx
  ☆38Updated 5 months ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 3 years ago
• DataX-JieHao / PASNet
  Pathway-based sparse deep neural network
  ☆19Updated 5 years ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• stonkgs / stonkgs
  Multimodal Transformers for biomedical text and Knowledge Graph data
  ☆35Updated 2 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆29Updated 2 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• leonweber / pedl
  Search the biomedical literature for protein interactions and protein associations
  ☆11Updated last year
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆77Updated 4 months ago