fhircat / FHIROntopOMOPLinks
FHIR Ontop OMOP Implementation
☆20Updated last year
Alternatives and similar repositories for FHIROntopOMOP
Users that are interested in FHIROntopOMOP are comparing it to the libraries listed below
Sorting:
- Transform the OMOP model to graph model☆24Updated 10 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆51Updated 2 weeks ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- A tutorial for the ROBOT command line tool.☆17Updated 3 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated last year
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- ☆19Updated last year
- ☆25Updated 8 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 2 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆45Updated last year
- LLM-driven curation assist tool☆96Updated last week
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18Updated 5 months ago
- Data Ingestion and Harmonization☆46Updated last month
- A generator of synthetic psychiatric notes.☆17Updated 5 years ago
- Main OMOPonFHIR Settings☆45Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- Integrated OBO ontology store☆48Updated 3 weeks ago
- Sketching out an RDF representation for FHIR☆43Updated 3 months ago
- A Neo4j Plugin for Handling HL7 FHIR Data☆66Updated 2 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆42Updated last year
- ☆27Updated 4 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Streamlined Data Mapping to OMOP☆19Updated last week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆118Updated 8 months ago
- ☆13Updated 3 weeks ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated this week
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago