dmis-lab / biobert-pytorchLinks
PyTorch Implementation of BioBERT
☆331Updated 2 years ago
Alternatives and similar repositories for biobert-pytorch
Users that are interested in biobert-pytorch are comparing it to the libraries listed below
Sorting:
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆689Updated 5 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆572Updated 2 years ago
- ☆152Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆192Updated 2 years ago
- ☆230Updated 7 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆168Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆116Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆420Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆188Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆330Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆594Updated last year
- A project for developing transformer-based models for clinical relation extraction☆128Updated last year
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆438Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆480Updated 6 months ago
- ☆98Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- repository for Publicly Available Clinical BERT Embeddings☆720Updated 4 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆70Updated 2 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated 10 months ago
- SciFive: a text-text transformer model for biomedical literature☆95Updated last year
- PubMedQA: A Dataset for Biomedical Research Question Answering☆334Updated 2 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆53Updated 2 years ago
- Biomedical NLP Corpus or Datasets.☆62Updated 3 years ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆69Updated 3 years ago