PyTorch Implementation of BioBERT
☆352Jun 24, 2023Updated 2 years ago
Alternatives and similar repositories for biobert-pytorch
Users that are interested in biobert-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,198Aug 13, 2023Updated 2 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆703Jun 2, 2020Updated 5 years ago
- Pre-trained Language Model for Biomedical Question Answering☆127Mar 24, 2023Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆592Mar 25, 2023Updated 3 years ago
- Transferability of Natural Language Inference to Biomedical Question Answering☆12Mar 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆124Dec 17, 2021Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 4 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- EMNLP'2020: Look at the First Sentence: Position Bias in Question Answering☆29Nov 4, 2020Updated 5 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- Predicting Multiple Demographic Attributes with Task Specific Embedding Transformation and Attention Network☆19May 25, 2020Updated 6 years ago
- repository for Publicly Available Clinical BERT Embeddings☆767Aug 25, 2020Updated 5 years ago
- FaVIQ: Fact Verification from Information-seeking Questions☆43Nov 23, 2022Updated 3 years ago
- This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).☆201Feb 23, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BioELECTRA☆51Oct 27, 2021Updated 4 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Mar 9, 2023Updated 3 years ago
- ☆96Aug 5, 2019Updated 6 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Jan 25, 2024Updated 2 years ago
- ☆13Apr 4, 2023Updated 3 years ago
- Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".☆14Jan 13, 2021Updated 5 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆234Aug 15, 2017Updated 8 years ago
- ☆20Sep 28, 2021Updated 4 years ago
- A BERT model for scientific text.☆1,698Feb 22, 2022Updated 4 years ago
- ☆59Nov 15, 2020Updated 5 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆452Apr 5, 2022Updated 4 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,959Dec 4, 2025Updated 5 months ago
- Learning from Negative samples for Biomedical Generative Entity Linking☆18May 25, 2025Updated last year
- Retrieve and process PubTator annotations☆44Aug 10, 2023Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆131Aug 15, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆163Jul 29, 2021Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper☆603Sep 24, 2023Updated 2 years ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆69Jul 19, 2021Updated 4 years ago
- Official implementation of the paper "Robust Neural Networks inspired by Strong Stability Preserving Runge-Kutta methods", ECCV 2020.☆15Oct 22, 2020Updated 5 years ago
- Code and supplementary material for the HealthINF conference paper☆13Jan 19, 2021Updated 5 years ago