dmis-lab / bern
A neural named entity recognition and multi-type normalization tool for biomedical text mining
☆178Updated 3 years ago
Alternatives and similar repositories for bern:
Users that are interested in bern are comparing it to the libraries listed below
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆164Updated last year
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆294Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- ☆227Updated 7 years ago
- Pre-trained Language Model for Biomedical Question Answering☆122Updated 2 years ago
- ☆152Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆326Updated 3 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- BioBert Pytorch☆116Updated 2 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ☆90Updated 5 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- ☆98Updated 3 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆186Updated last year
- Python wraper for MetaMap☆171Updated 4 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated last year
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆571Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 4 years ago