A neural named entity recognition and multi-type normalization tool for biomedical text mining
☆177Apr 18, 2022Updated 4 years ago
Alternatives and similar repositories for bern
Users that are interested in bern are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 7 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆185Jul 7, 2023Updated 3 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,205Aug 13, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Sep 28, 2021Updated 4 years ago
- Pre-trained Language Model for Biomedical Question Answering☆126Mar 24, 2023Updated 3 years ago
- BioBert Pytorch☆116Dec 9, 2022Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆346Nov 9, 2021Updated 4 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆18Apr 21, 2022Updated 4 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41May 31, 2020Updated 6 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predicting Multiple Demographic Attributes with Task Specific Embedding Transformation and Attention Network☆19May 25, 2020Updated 6 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆599Mar 25, 2023Updated 3 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Jul 27, 2015Updated 11 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated 2 years ago
- covidAsk: Answering Questions on COVID-19 in Real-Time☆64Nov 9, 2022Updated 3 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,988Dec 4, 2025Updated 8 months ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- System for Medical Concept Extraction and Linking☆451Aug 12, 2024Updated 2 years ago
- PyTorch Implementation of BioBERT☆351Jun 24, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated 2 years ago
- Simple Questions Generate Named Entity Recognition Datasets (EMNLP 2022)☆75Apr 10, 2023Updated 3 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 5 months ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Mar 9, 2023Updated 3 years ago
- This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).☆201Feb 23, 2021Updated 5 years ago
- A BERT model for scientific text.☆1,715Feb 22, 2022Updated 4 years ago
- ☆16Aug 8, 2022Updated 4 years ago
- ☆236Aug 15, 2017Updated 9 years ago
- For icibm paper☆11Feb 23, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆82Aug 12, 2026Updated 2 weeks ago
- Crowdsourced ground truth for medical relation extraction.☆69Mar 18, 2019Updated 7 years ago
- Official implementation of the paper "Robust Neural Networks inspired by Strong Stability Preserving Runge-Kutta methods", ECCV 2020.☆16Oct 22, 2020Updated 5 years ago
- BERT models pretrained on the CORD-19 Kaggle dataset☆15Jun 8, 2020Updated 6 years ago
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Apr 4, 2024Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆615Aug 15, 2023Updated 3 years ago
- a module to calculate the MeSH similarity☆26Apr 13, 2021Updated 5 years ago