lasigeBioTM / BiOnt
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
☆26Updated last year
Alternatives and similar repositories for BiOnt:
Users that are interested in BiOnt are comparing it to the libraries listed below
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 2 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- ☆35Updated 4 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago
- ☆32Updated last year
- ☆72Updated last year
- ☆24Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 4 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Biomedical Relation Extraction with Knowledge Graph-based Recommendations☆9Updated last year
- ☆17Updated 4 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last month
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Repository used to collect biomedical corpus on the Internet!☆34Updated 4 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year
- ☆67Updated 2 years ago