lasigeBioTM / BiOntLinks
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
☆27Updated 2 years ago
Alternatives and similar repositories for BiOnt
Users that are interested in BiOnt are comparing it to the libraries listed below
Sorting:
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆178Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆21Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Updated 2 years ago
- ☆37Updated 5 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Named Entity Recognition for biomedical entities☆49Updated 3 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 7 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆49Updated 10 months ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 6 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆213Updated 2 years ago
- ☆101Updated 3 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated last year
- ☆31Updated last year
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 6 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Updated 5 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Updated 4 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 3 years ago
- ☆77Updated 2 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Updated 2 years ago