BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
☆27Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for BiOnt
Users that are interested in BiOnt are comparing it to the libraries listed below
Sorting:
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Oct 6, 2022Updated 3 years ago
- Identification of Human Phenotype Entities☆11Nov 2, 2018Updated 7 years ago
- ☆24May 8, 2021Updated 4 years ago
- Tools for working with the S800 corpus☆12Sep 17, 2020Updated 5 years ago
- Python library for working with BioC files☆13Mar 28, 2018Updated 7 years ago
- ☆37Nov 16, 2020Updated 5 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- AIONER☆65Jul 25, 2024Updated last year
- Data structures and code to read/write BioC XML and Json.☆33Aug 21, 2023Updated 2 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- ☆31Jun 26, 2023Updated 2 years ago
- ☆20Aug 28, 2022Updated 3 years ago
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆14Aug 23, 2022Updated 3 years ago
- [COLING22] Text-to-Text Extraction and Verbalization of Biomedical Event Graphs☆10Nov 5, 2022Updated 3 years ago
- ☆43May 17, 2025Updated 10 months ago
- Zero-Shot Learning in Named Entity Recognition with Common Sense Knowledge☆17Nov 16, 2021Updated 4 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 7 years ago
- ☆48Aug 30, 2023Updated 2 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 6 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Jan 27, 2024Updated 2 years ago
- About, prompt-based few-shot learning, Text Generation with Prompting☆13May 9, 2023Updated 2 years ago
- Code for blog posts.☆20Oct 23, 2023Updated 2 years ago
- Detecting drug-drug interaction (DDI) has become a vital part of public health safety. This project is an implementation of NLP based app…☆17Oct 17, 2017Updated 8 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆203Mar 28, 2024Updated last year
- ☆11Jun 26, 2023Updated 2 years ago
- Source code for IJCAI 2020 paper "A Relation-Specific Attention Network for Joint Entity and Relation Extraction"☆52Mar 6, 2021Updated 5 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Jul 31, 2019Updated 6 years ago
- A fine-tuned BERT using EHR notes.☆14Sep 12, 2019Updated 6 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Sep 24, 2020Updated 5 years ago
- ☆16Mar 9, 2018Updated 8 years ago
- Weakly supervised medical named entity classification☆73Dec 23, 2022Updated 3 years ago
- ☆22May 16, 2023Updated 2 years ago
- The source code for ACL 2021 paper☆19Oct 9, 2021Updated 4 years ago
- Joint Biomedical Entity and Relation Extraction with Knowledge-Enhanced Collective Inference☆43Nov 8, 2022Updated 3 years ago
- The sample web app for the yFiles use case about an Ontology Visualizer.☆14Apr 1, 2025Updated 11 months ago