lasigeBioTM / BiOntLinks
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
☆27Updated last year
Alternatives and similar repositories for BiOnt
Users that are interested in BiOnt are comparing it to the libraries listed below
Sorting:
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆173Updated 2 years ago
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 7 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Updated last year
- ☆100Updated 3 years ago
- ☆35Updated 4 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 6 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 7 months ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆20Updated 2 years ago
- ☆70Updated 3 years ago
- ☆31Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- ☆74Updated last year
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Knowledge graphs generation from unstructured text.☆71Updated 8 months ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆56Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆205Updated 2 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆101Updated 4 years ago