ncbi-nlp / bluebertLinks
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
☆572Updated 2 years ago
Alternatives and similar repositories for bluebert
Users that are interested in bluebert are comparing it to the libraries listed below
Sorting:
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 3 years ago
- PyTorch Implementation of BioBERT☆330Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆594Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆330Updated 3 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆689Updated 5 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆420Updated 2 years ago
- ☆152Updated last year
- repository for Publicly Available Clinical BERT Embeddings☆720Updated 4 years ago
- ☆230Updated 7 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- System for Medical Concept Extraction and Linking☆404Updated 10 months ago
- multilabel classification of EHR notes☆288Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆167Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆192Updated 2 years ago
- Python wraper for MetaMap☆174Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆128Updated last year
- Tools for curating biomedical training data for large-scale language modeling☆480Updated 6 months ago
- Medical Text Mining and Information Extraction with spaCy☆438Updated 2 years ago
- ☆217Updated 6 months ago
- ☆98Updated 3 years ago
- Medical Concept Annotation Tool☆500Updated this week
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆116Updated 3 years ago
- PubMed PICO Element Detection Dataset☆57Updated 6 years ago
- PubMed 200k RCT dataset: a large dataset for sequential sentence classification.☆194Updated last year
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆438Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆271Updated last year