ncbi-nlp / bluebertLinks
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
☆580Updated 2 years ago
Alternatives and similar repositories for bluebert
Users that are interested in bluebert are comparing it to the libraries listed below
Sorting:
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆600Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆699Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆334Updated 3 years ago
- ☆152Updated last year
- PyTorch Implementation of BioBERT☆341Updated 2 years ago
- Python wraper for MetaMap☆173Updated 5 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆426Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆172Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆152Updated 2 years ago
- System for Medical Concept Extraction and Linking☆417Updated last year
- ☆232Updated 8 years ago
- repository for Publicly Available Clinical BERT Embeddings☆734Updated 5 years ago
- multilabel classification of EHR notes☆288Updated 5 years ago
- ☆99Updated 3 years ago
- Medical Concept Annotation Tool☆511Updated 2 months ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆201Updated 2 years ago
- ☆219Updated 9 months ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- Medical Text Mining and Information Extraction with spaCy☆441Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆121Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆130Updated 2 years ago
- Code for the emrQA question answering dataset☆149Updated 3 years ago
- Tools for curating biomedical training data for large-scale language modeling☆484Updated 9 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 3 years ago