ncbi-nlp / bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
☆558Updated last year
Related projects ⓘ
Alternatives and complementary repositories for bluebert
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆578Updated last year
- PyTorch Implementation of BioBERT☆312Updated last year
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆668Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆286Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆381Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆312Updated 3 years ago
- ☆223Updated 7 years ago
- ☆144Updated 11 months ago
- repository for Publicly Available Clinical BERT Embeddings☆675Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆173Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆144Updated last year
- System for Medical Concept Extraction and Linking☆379Updated 3 months ago
- Python wraper for MetaMap☆170Updated 4 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆157Updated 3 years ago
- Medical Text Mining and Information Extraction with spaCy☆432Updated 2 years ago
- Pre-trained Language Model for Biomedical Question Answering☆122Updated last year
- Medical Concept Annotation Tool☆451Updated this week
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆1,955Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year
- ☆95Updated 2 years ago
- Library for clinical NLP with spaCy.☆535Updated 3 weeks ago
- multilabel classification of EHR notes☆277Updated 4 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆204Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆174Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆102Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆175Updated 7 months ago
- Tools for curating biomedical training data for large-scale language modeling☆459Updated 3 weeks ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,711Updated this week