Alternatives and similar repositories for ChemDisGene:

Users that are interested in ChemDisGene are comparing it to the libraries listed below

• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 3 years ago
• stonkgs / stonkgs
  Multimodal Transformers for biomedical text and Knowledge Graph data
  ☆34Updated 2 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• ncbi / bert_gt
  ☆32Updated last year
• BaderLab / Biomedical-Corpora
  A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…
  ☆36Updated 6 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated last year
• hu-ner / huner
  Named Entity Recognition for biomedical entities
  ☆47Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆54Updated 2 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆12Updated 4 months ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• YerevaNN / BioRelEx
  🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019
  ☆19Updated 5 years ago
• CongSun-dlut / CPI_extraction
  CPI Extraction
  ☆9Updated 2 years ago
• kamalkraj / BioELECTRA
  BioELECTRA
  ☆50Updated 3 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated last month
• dmis-lab / BioLAMA
  EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?
  ☆57Updated 2 years ago
• udel-biotm-lab / BERT-CLRE
  ☆24Updated 3 years ago
• lfurrer / bconv
  Python library for converting between BioNLP formats
  ☆21Updated 2 years ago
• isegura / DDICorpus
  ☆35Updated 4 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• rubenkruiper / FOBIE
  FOBIE dataset and code for Semi-Open Relation Extraction, applied to Biology for Computer-Aided Biomimetics.
  ☆35Updated 4 years ago
• Andy-jqa / bioelmo
  BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.
  ☆33Updated 5 years ago
• JohnGiorgi / seq2rel
  The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.
  ☆63Updated 11 months ago
• LHNCBC / SemRep
  ☆67Updated 2 years ago
• UCDenver-ccp / CRAFT
  ☆72Updated last year
• yuzhimanhua / Multi-BioNER
  Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
  ☆135Updated 9 months ago
• xuanwang91 / AutoBioNER
  Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212
  ☆12Updated 4 years ago
• ncbi / BioRED
  ☆24Updated last year
• Yuanhy1997 / GenBioEL
  Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]
  ☆19Updated 2 years ago