chanzuckerberg / ChemDisGeneLinks
Bio relation extraction labeled dataset
☆45Updated 3 years ago
Alternatives and similar repositories for ChemDisGene
Users that are interested in ChemDisGene are comparing it to the libraries listed below
Sorting:
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated 2 years ago
- ☆32Updated last year
- Biomedical Entity Linking Benchmark☆13Updated 6 months ago
- CPI Extraction☆9Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- ☆24Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- ☆67Updated 3 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- Using pretrained language models for biomedical knowledge graph completion.☆47Updated 3 years ago
- ☆18Updated 3 years ago
- BioELECTRA☆50Updated 3 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Updated 2 years ago
- ☆35Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆192Updated 2 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆63Updated last year
- Repository for student projects within biomedical text mining from Lund University☆54Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆12Updated 5 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated 11 months ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆27Updated last year