ACL'2020: Biomedical Entity Representations with Synonym Marginalization
☆178Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for BioSyn
Users that are interested in BioSyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆223Apr 28, 2023Updated 2 years ago
- ☆16Aug 8, 2022Updated 3 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆202Mar 28, 2024Updated 2 years ago
- ☆20Sep 28, 2021Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Jul 27, 2015Updated 10 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆18Apr 21, 2022Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization☆25Feb 22, 2021Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆343Nov 9, 2021Updated 4 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- ACL'2020: Contextualized Sparse Representations for Real-Time Open-Domain Question Answering☆49Oct 6, 2020Updated 5 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Jun 28, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- Bio relation extraction labeled dataset☆45Apr 15, 2022Updated 3 years ago
- EMNLP'2020: Look at the First Sentence: Position Bias in Question Answering☆29Nov 4, 2020Updated 5 years ago
- ☆10Jun 16, 2021Updated 4 years ago
- Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]☆19Jan 27, 2023Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆125Mar 24, 2023Updated 3 years ago
- A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"☆53Jul 24, 2022Updated 3 years ago
- FaVIQ: Fact Verification from Information-seeking Questions☆43Nov 23, 2022Updated 3 years ago
- ☆12Jun 23, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆163Jul 29, 2021Updated 4 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 3 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- BioBert Pytorch☆115Dec 9, 2022Updated 3 years ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆34Jun 26, 2021Updated 4 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆66Feb 6, 2023Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Predicting Multiple Demographic Attributes with Task Specific Embedding Transformation and Attention Network☆19May 25, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,195Aug 13, 2023Updated 2 years ago
- ☆24Jun 12, 2023Updated 2 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Recent trends of Entity Linking, Disambiguation, and Representation.☆346Jun 26, 2021Updated 4 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,940Dec 4, 2025Updated 4 months ago
- PyTorch Implementation of BioBERT☆350Jun 24, 2023Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Aug 21, 2023Updated 2 years ago