Bioformer: an efficient BERT model for biomedical text mining
☆56Feb 7, 2023Updated 3 years ago
Alternatives and similar repositories for Bioformer
Users that are interested in Bioformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- AIONER☆70Jul 25, 2024Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆32Dec 3, 2019Updated 6 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆299Jan 12, 2022Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Grounding of biomedical named entities with contextual disambiguation☆54Jun 29, 2026Updated 3 weeks ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- ☆13Oct 20, 2022Updated 3 years ago
- The corresponding code for our paper: "Exploring the Challenges of Open Domain Multi-Document Summarization". Do not hesitate to open an …☆33Jun 24, 2023Updated 3 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Jan 27, 2024Updated 2 years ago
- ☆12Jul 10, 2022Updated 4 years ago
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆15Aug 23, 2022Updated 3 years ago
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.☆24Jul 31, 2018Updated 7 years ago
- FingerPrint Kit - Python-based cheminformatics package for fingerprint-related tasks☆12Jun 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Oct 6, 2022Updated 3 years ago
- This repository contains the implementation of the paper: "Span Classification with Structured Information for Disfluency Detection in Sp…☆14Jun 6, 2023Updated 3 years ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Jan 30, 2022Updated 4 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Jan 31, 2024Updated 2 years ago
- ☆13Jul 24, 2023Updated 2 years ago
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 8 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆232Apr 28, 2023Updated 3 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆164Jul 29, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- molecule design for fluorescence☆12Nov 22, 2021Updated 4 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated last year
- Flash entropy search☆18Sep 24, 2023Updated 2 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Jul 25, 2024Updated last year
- [ICML 2023] Tuning Language Models as Training Data Generators for Augmentation-Enhanced Few-Shot Learning☆44May 10, 2023Updated 3 years ago
- ☆11Nov 19, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- T2NER: Transformers based Transfer Learning Framework for Named Entity Recognition (EACL 2021)☆11Sep 24, 2022Updated 3 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Official repository for the paper "Question Answering Infused Pre-training of General-Purpose Contextualized Representations" by Robin Ji…☆16Aug 13, 2021Updated 4 years ago
- ☆13Dec 13, 2022Updated 3 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆457Apr 5, 2022Updated 4 years ago
- 2019 Toronto Datathon https://www.tdothealthhack.com☆11Oct 4, 2019Updated 6 years ago
- Build PharMeBINet from different sources.☆22Updated this week