WGLab / Bioformer
Bioformer: an efficient BERT model for biomedical text mining
☆53Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Bioformer
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 4 years ago
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- BioELECTRA☆51Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Biomedical Entity Linking Benchmark☆10Updated last week
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- ☆25Updated 10 months ago
- ☆31Updated 8 months ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆32Updated last year
- BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR☆23Updated 3 years ago
- AIONER☆44Updated 3 months ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆54Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆34Updated 9 months ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆174Updated last year
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Updated 6 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Updated 5 years ago
- ☆40Updated 4 years ago
- Codes for the EMNLP'2020 paper "Predicting Clinical Trial Results by Implicit Evidence Integration".☆14Updated 3 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆16Updated 7 months ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated last year
- a module to calculate the MeSH similarity☆24Updated 2 years ago
- Repository used to collect biomedical corpus on the Internet!☆31Updated 4 years ago
- Text annotation tool for team collaboration☆39Updated 10 months ago