Alternatives and similar repositories for biobert

Users that are interested in biobert are comparing it to the libraries listed below

• naver / biobert-pretrained
  BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆698Updated 5 years ago
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆340Updated 2 years ago
• allenai / scibert
  A BERT model for scientific text.
  ☆1,640Updated 3 years ago
• allenai / scispacy
  A full spaCy pipeline and models for scientific/biomedical documents.
  ☆1,875Updated this week
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆578Updated 2 years ago
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆597Updated 2 years ago
• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆734Updated 5 years ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆426Updated 2 years ago
• juand-r / entity-recognition-datasets
  A collection of corpora for named entity recognition (NER) and entity recognition tasks. These annotated datasets cover a variety of lang…
  ☆1,549Updated 3 months ago
• appvision-ai / fast-bert
  Super easy library for BERT based NLP models
  ☆1,903Updated last year
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆297Updated 3 years ago
• nlpyang / BertSum
  Code for paper Fine-tune BERT for Extractive Summarization
  ☆1,496Updated 3 years ago
• NLPatVCU / medaCy
  Medical Text Mining and Information Extraction with spaCy
  ☆440Updated 2 years ago
• kamalkraj / BERT-NER
  Pytorch-Named-Entity-Recognition-with-BERT
  ☆1,244Updated 4 years ago
• re-search / DocProduct
  Medical Q&A with Deep Language Models
  ☆571Updated 2 years ago
• tomohideshibata / BERT-related-papers
  BERT-related papers
  ☆2,046Updated 2 years ago
• titipata / pubmed_parser
  A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
  ☆691Updated last month
• jasonwei20 / eda_nlp
  Data augmentation for NLP, presented at EMNLP 2019
  ☆1,651Updated 2 years ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆483Updated 9 months ago
• plkmo / BERT-Relation-Extraction
  PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
  ☆600Updated last year
• explosion / spacy-transformers
  🛸 Use pretrained transformers like BERT, XLNet and GPT-2 in spaCy
  ☆1,393Updated 3 months ago
• cambridgeltl / MTL-Bioinformatics-2016
  ☆232Updated 8 years ago
• google-research / electra
  ELECTRA: Pre-training Text Encoders as Discriminators Rather Than Generators
  ☆2,362Updated last year
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆178Updated 3 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆333Updated 3 years ago
• chakki-works / seqeval
  A Python framework for sequence labeling evaluation(named-entity recognition, pos tagging, etc...)
  ☆1,150Updated last year
• facebookresearch / XLM
  PyTorch original implementation of Cross-lingual Language Model Pretraining.
  ☆2,923Updated 2 years ago
• facebookresearch / LAMA
  LAnguage Model Analysis
  ☆1,391Updated last year
• facebookresearch / SpanBERT
  Code for using and evaluating SpanBERT.
  ☆899Updated 2 years ago
• nlpyang / PreSumm
  code for EMNLP 2019 paper Text Summarization with Pretrained Encoders
  ☆1,301Updated last year