Alternatives and similar repositories for biobert:

Users that are interested in biobert are comparing it to the libraries listed below

• naver / biobert-pretrained
  BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆687Updated 4 years ago
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆325Updated last year
• allenai / scibert
  A BERT model for scientific text.
  ☆1,584Updated 3 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆571Updated 2 years ago
• allenai / scispacy
  A full spaCy pipeline and models for scientific/biomedical documents.
  ☆1,789Updated 4 months ago
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆590Updated last year
• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆710Updated 4 years ago
• kamalkraj / BERT-NER
  Pytorch-Named-Entity-Recognition-with-BERT
  ☆1,236Updated 3 years ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆293Updated 3 years ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆412Updated 2 years ago
• juand-r / entity-recognition-datasets
  A collection of corpora for named entity recognition (NER) and entity recognition tasks. These annotated datasets cover a variety of lang…
  ☆1,535Updated 4 months ago
• facebookresearch / BLINK
  Entity Linker solution
  ☆1,187Updated last year
• plkmo / BERT-Relation-Extraction
  PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
  ☆594Updated last year
• explosion / spacy-transformers
  🛸 Use pretrained transformers like BERT, XLNet and GPT-2 in spaCy
  ☆1,379Updated 2 months ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆325Updated 3 years ago
• utterworks / fast-bert
  Super easy library for BERT based NLP models
  ☆1,894Updated 8 months ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆476Updated 4 months ago
• studio-ousia / luke
  LUKE -- Language Understanding with Knowledge-based Embeddings
  ☆722Updated last year
• NLPatVCU / medaCy
  Medical Text Mining and Information Extraction with spaCy
  ☆436Updated 2 years ago
• facebookresearch / SpanBERT
  Code for using and evaluating SpanBERT.
  ☆897Updated last year
• roomylee / awesome-relation-extraction
  📖 A curated list of awesome resources dedicated to Relation Extraction, one of the most important tasks in Natural Language Processing (…
  ☆1,199Updated 3 years ago
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆178Updated 3 years ago
• namisan / mt-dnn
  Multi-Task Deep Neural Networks for Natural Language Understanding
  ☆2,250Updated last year
• google-research / electra
  ELECTRA: Pre-training Text Encoders as Discriminators Rather Than Generators
  ☆2,351Updated last year
• abachaa / MedQuAD
  Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
  ☆382Updated last year
• facebookresearch / SentEval
  A python tool for evaluating the quality of sentence embeddings.
  ☆2,105Updated last year
• cambridgeltl / MTL-Bioinformatics-2016
  ☆226Updated 7 years ago
• allenai / allennlp-models
  Officially supported AllenNLP models
  ☆540Updated 2 years ago
• deepset-ai / FARM
  Fast & easy transfer learning for NLP. Harvesting language models for the industry. Focus on Question Answering.
  ☆1,750Updated last year
• chakki-works / seqeval
  A Python framework for sequence labeling evaluation(named-entity recognition, pos tagging, etc...)
  ☆1,127Updated 7 months ago