dlegor / SparCC

Related projects ⓘ

Alternatives and complementary repositories for SparCC

• kelwyres / Bactabolize
  ☆35Updated last week
• ziyewang / MetaBinner
  ☆48Updated 8 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆69Updated 3 weeks ago
• EBI-Metagenomics / mettannotator
  ☆56Updated last month
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last month
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆13Updated 10 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆49Updated this week
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆68Updated 4 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 3 months ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆58Updated 2 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆26Updated 11 months ago
• allind / EukDetect
  ☆45Updated 7 months ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆35Updated 9 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• jlw-ecoevo / gRodon
  ☆17Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆49Updated 4 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆29Updated 8 months ago
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆41Updated last year
• segalab / SGVFinder
  ☆30Updated last year
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆10Updated 3 weeks ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆10Updated this week
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆60Updated 3 months ago
• medema-group / BiG-MAP
  ☆25Updated 8 months ago
• philarevalo / PopCOGenT
  Microbial Populations as Clusters Of Gene Transfer
  ☆42Updated 11 months ago
• ziyewang / COMEBin
  ☆37Updated 8 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆48Updated 6 months ago
• cmkobel / CompareM2
  🦠📇 Microbial genomes-to-report pipeline
  ☆54Updated last week
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆49Updated 3 weeks ago