☆22Apr 10, 2025Updated last year
Alternatives and similar repositories for CycleDesigner
Users that are interested in CycleDesigner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆43Jun 30, 2026Updated 3 weeks ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆15Nov 24, 2020Updated 5 years ago
- ☆45Apr 30, 2024Updated 2 years ago
- ☆86Jan 23, 2026Updated 5 months ago
- ☆28Mar 21, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Weighted Ensemble Data Analysis and Plotting☆27Updated this week
- Codes for our paper "Programming Biomolecular Interactions with All-Atom Generative Model"☆84Jun 6, 2026Updated last month
- Introduction to cyclic peptide simulations and our group's protocols.☆18Sep 21, 2023Updated 2 years ago
- AlphaBind code + model accompanying pre-print☆92Jul 24, 2025Updated 11 months ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆22Feb 23, 2026Updated 4 months ago
- A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS☆169May 9, 2026Updated 2 months ago
- ☆48Sep 24, 2025Updated 9 months ago
- A semi-automated force field converter for GROMACS. Enables users to easily convert a system between two all-atom force fields. Requires …☆17Sep 23, 2025Updated 9 months ago
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆47Jan 8, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆32May 10, 2025Updated last year
- Official repository of PXDesign☆236Dec 31, 2025Updated 6 months ago
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated last month
- ☆20Nov 24, 2025Updated 7 months ago
- Rank binders by structure modeling☆17Apr 10, 2026Updated 3 months ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- Collection of tools to calculate properties of natural or synthetic peptides and proteins.☆76Apr 13, 2026Updated 3 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated last year
- Energy-guided binder design pipeline built on BindCraft☆18Jun 6, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Oct 14, 2023Updated 2 years ago
- ☆16Jul 11, 2026Updated last week
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆141Apr 27, 2026Updated 2 months ago
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆53Oct 27, 2025Updated 8 months ago
- ☆18Oct 5, 2024Updated last year
- ☆83Oct 23, 2024Updated last year
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆15Feb 18, 2025Updated last year
- ☆24Dec 4, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- open source repository☆149Nov 30, 2023Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated 2 years ago
- GatorAffinity: Boosting Protein-Ligand Binding Affinity Prediction with Large-Scale Synthetic Structural Data☆35Apr 10, 2026Updated 3 months ago
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆17Jul 9, 2024Updated 2 years ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 4 months ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated 2 years ago
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated 10 months ago