Alternatives and similar repositories for joltz

Users that are interested in joltz are comparing it to the libraries listed below

• whitead / minimalaf
  Minimal AlphaFold
  ☆56Updated last year
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆33Updated 3 years ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆50Updated 11 months ago
• uw-ipd / tmol
  TMol
  ☆50Updated last week
• instadeepai / AbBFN2
  AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks
  ☆37Updated 8 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆24Updated 2 years ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 8 months ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆35Updated 3 years ago
• softnanolab / bagel
  Protein Engineering via Exploration of an Energy Landscape
  ☆103Updated last week
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆75Updated 2 weeks ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆56Updated last year
• patrick-kidger / esm2quinox
  An implementation of ESM2 in Equinox+JAX
  ☆36Updated 8 months ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆98Updated 2 years ago
• NVIDIA-Digital-Bio / RNAPro
  RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…
  ☆51Updated 3 weeks ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆53Updated 6 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆32Updated 3 years ago
• RomeroLab / RLXF
  Consolidated repository to perform RLXF
  ☆36Updated this week
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆92Updated 3 months ago
• transferable-samplers / transferable-samplers
  A repo for transferable sampling of molecular systems
  ☆36Updated last month
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆55Updated 2 years ago
• PeptoneLtd / nerfax
  An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
  ☆21Updated last year
• sokrypton / af_backprop
  ☆37Updated last year
• aivant / peppr
  It's a package for evaluation of predicted poses, right?
  ☆73Updated 3 weeks ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆82Updated 7 months ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆21Updated 2 years ago
• strodel-group / TransMEP
  Transfer learning for Mutation Effect Prediction
  ☆17Updated last year
• ProteinDesignLab / caliby
  Potts model-based protein sequence design
  ☆78Updated 3 weeks ago
• jproney / ProteinEBM
  ☆83Updated last month
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 7 months ago