Alternatives and similar repositories for joltz

Users that are interested in joltz are comparing it to the libraries listed below

• patrick-kidger / esm2quinox
  An implementation of ESM2 in Equinox+JAX
  ☆32Updated 2 months ago
• whitead / minimalaf
  Minimal AlphaFold
  ☆53Updated last year
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆32Updated 2 years ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 3 months ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆34Updated 3 years ago
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆46Updated 5 months ago
• plainerman / Variational-Doob
  Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling
  ☆50Updated 5 months ago
• PeptoneLtd / nerfax
  An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
  ☆17Updated last year
• prescient-design / e3tools
  Building Blocks for Equivariant Neural Networks in e3nn and PyTorch 2.0
  ☆15Updated 3 weeks ago
• escalante-bio / mosaic
  composite-objective protein design
  ☆75Updated this week
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated last year
• uw-ipd / tmol
  TMol
  ☆41Updated 3 weeks ago
• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• ur-whitelab / maxent
  MaxEnt code for fitting simulation outcomes/statistical models to observations
  ☆16Updated 3 years ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆56Updated last year
• lollcat / se3-augmented-coupling-flows
  SE(3) Equivariant Augmented Coupling Flows. NeurIPS 2023.
  ☆24Updated last year
• molstar / ipymolstar
  Mol* as anywidget
  ☆39Updated 2 months ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• instadeepai / AbBFN2
  AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks
  ☆25Updated 2 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆23Updated last year
• psipred / cgdms
  Differentiable molecular simulation of proteins with a coarse-grained potential
  ☆55Updated 4 months ago
• RomeroLab / RLXF
  Consolidated repository to perform RLXF
  ☆32Updated 3 months ago
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆65Updated 2 weeks ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆134Updated 4 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆123Updated 2 years ago
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆128Updated this week
• biotite-dev / fastpdb
  A high performance drop-in replacement for Biotite's PDBFile.
  ☆39Updated 3 months ago
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆99Updated 2 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆30Updated 2 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year