vendruscolo-lab / AlphaFold-IDPLinks
This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by using AlphaFold generated residue distance maps as constraints in any prior-structural ensemble
☆19Updated 9 months ago
Alternatives and similar repositories for AlphaFold-IDP
Users that are interested in AlphaFold-IDP are comparing it to the libraries listed below
Sorting:
- Explicit crosslinks in AlphaFold 3☆22Updated 6 months ago
- Code for ApoDock☆20Updated 5 months ago
- Some scripts that I keep using over and over.☆20Updated 2 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆36Updated 3 months ago
- Modelling protein conformational landscape with Alphafold☆52Updated 2 weeks ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 3 months ago
- Code for deep learning guided design of dynamic proteins☆29Updated last year
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆38Updated 2 weeks ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆58Updated last month
- ☆14Updated 3 months ago
- ☆15Updated last year
- Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x☆24Updated last month
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆31Updated last month
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 2 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 6 months ago
- Automated construction of protein chimeras and their analysis.☆15Updated last year
- Demos of many Rosetta applications☆18Updated 3 months ago
- bakerlab pymol scripts☆24Updated 5 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆21Updated 6 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- DyNoPy☆11Updated last year
- ☆16Updated 8 months ago
- protein structure generation with sparse all-atom denoising models☆36Updated last month
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 5 months ago
- ☆13Updated last year
- ☆36Updated last year
- Kuhlman Lab Installation of AlphaFold3☆30Updated this week
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago