janelia-cellmap / heinrich-2021aLinks
Resources for Heinrich et al., 2021
☆19Updated 4 years ago
Alternatives and similar repositories for heinrich-2021a
Users that are interested in heinrich-2021a are comparing it to the libraries listed below
Sorting:
- MorphoFeatures code and data☆22Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Python package for deep learning based image to image transformation☆53Updated 2 months ago
- Tool for segmentation in bioimaging☆35Updated last week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 6 months ago
- ☆32Updated 5 months ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- ☆14Updated 3 months ago
- CellTracker: An Automated Toolbox for Single-Cell Segmentation and Tracking in Microscopy Images☆20Updated 5 years ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- A napari plugin for itk-elastix☆39Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆59Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ☆11Updated last year
- 🌈☆67Updated 3 months ago
- ☆17Updated 7 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 9 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆75Updated 4 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆22Updated 9 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- Cloud-based data annotation tools for biological images☆84Updated last year
- Command line tool for registration of very large 3D volumes.☆15Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 2 weeks ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 5 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆87Updated last week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago