Opinionated viral metagenomics workflow
☆11Updated this week
Alternatives and similar repositories for nvd
Users that are interested in nvd are comparing it to the libraries listed below
Sorting:
- ☆19Updated this week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated this week
- Viral (meta)-genome assembly pipeline.☆22Feb 17, 2026Updated last week
- ☆18Feb 20, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Feb 19, 2026Updated last week
- US Health and Human Services scientific funding visualizations☆17Updated this week
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated 2 weeks ago
- CZID (formerly IDseq) infectious disease command-line interface☆21Jul 22, 2024Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆62Updated this week
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Nov 27, 2025Updated 3 months ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams☆12May 3, 2024Updated last year
- ☆12Feb 15, 2023Updated 3 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Feb 20, 2026Updated last week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 8 months ago
- A disk cleaner app written in Rust, tauri, react.☆20Dec 6, 2025Updated 2 months ago
- Pre-commit, pre-push, rust-centric☆20Feb 4, 2026Updated 3 weeks ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆37Feb 12, 2026Updated 2 weeks ago
- Bitpacked sequence trait and implementation☆16Jan 20, 2026Updated last month
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆12Jul 16, 2024Updated last year
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated 9 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated last month
- OpenShift cartridge for DreamFactory☆10Mar 26, 2017Updated 8 years ago
- ☆12Oct 27, 2025Updated 4 months ago
- Portable WDL workflows for CZ ID production pipelines☆51Jun 17, 2025Updated 8 months ago
- ☆12Jan 29, 2020Updated 6 years ago
- Lightweight Gleam library for working with streams☆12Jan 3, 2026Updated last month
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Nov 24, 2025Updated 3 months ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- ☆11Dec 24, 2024Updated last year
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Maturin Starter Project w/PyO3 & Poetry☆13Aug 28, 2022Updated 3 years ago