Opinionated viral metagenomics workflow
☆16Jun 24, 2026Updated this week
Alternatives and similar repositories for nvd
Users that are interested in nvd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Updated this week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆53Jun 22, 2026Updated last week
- Viral (meta)-genome assembly pipeline.☆23May 28, 2026Updated last month
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 3 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆75Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Updated this week
- US Health and Human Services scientific funding visualizations☆17Updated this week
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆36Apr 10, 2026Updated 2 months ago
- The home of Carbon Genomic Foundation Model 🧬☆200Jun 6, 2026Updated 3 weeks ago
- Tools for evolutionary forecasting☆14Jun 19, 2026Updated last week
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- ☆60Jan 16, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams☆12May 3, 2024Updated 2 years ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 7 months ago
- CZID (formerly IDseq) infectious disease command-line interface☆22Apr 8, 2026Updated 2 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 4 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ultra-rapid detection of viral variants directly from sequencing data☆45Updated this week
- emm Automatic Isolate Labeller☆14Mar 25, 2025Updated last year
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆51Updated this week
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- ☆16Jun 27, 2025Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Jun 21, 2026Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 9 months ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-based consensus creation☆61Jun 23, 2026Updated last week
- Portable WDL workflows for CZ ID production pipelines☆51Apr 23, 2026Updated 2 months ago
- ☆19May 13, 2021Updated 5 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- ☆12Jan 29, 2020Updated 6 years ago
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆12Jul 16, 2024Updated last year
- Parse Cloud Code for retrieving and storying Tweets from the Twitter API☆11Jun 11, 2015Updated 11 years ago