fbemm / onefc-oneasm
Simple code snippets and data for the One Flowcell - One Assembly study
☆36Updated 7 years ago
Alternatives and similar repositories for onefc-oneasm:
Users that are interested in onefc-oneasm are comparing it to the libraries listed below
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated last month
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆52Updated this week
- ☆43Updated 8 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- ☆70Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- Error correction of ONT transcript reads☆59Updated last year
- De novo annotation of young retrotransposons☆47Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆38Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 9 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- A collection of command line tools for working with sequencing data☆51Updated this week
- Genome Annotation Without Nightmares☆43Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Useful bioinformatic scripts☆54Updated 2 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆79Updated 9 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Simple pileup-based variant caller☆86Updated 10 months ago
- perSVade: personalized Structural Variation detection☆38Updated 3 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- A program to call variants from genome alignment☆78Updated 11 months ago