fbemm / onefc-oneasm
Simple code snippets and data for the One Flowcell - One Assembly study
☆36Updated 6 years ago
Related projects: ⓘ
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆58Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated last month
- ☆41Updated 7 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆52Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- Long Reads Annotation pipeline☆71Updated 2 years ago
- Error correction of ONT transcript reads☆57Updated last year
- ☆68Updated 4 years ago
- Same species annotation lift over pipeline.☆95Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆21Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- ☆36Updated this week
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- A program to call variants from genome alignment☆75Updated 6 months ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆70Updated 4 months ago
- NLR-Annotator upload☆56Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated 6 months ago
- web documentation for Trinotate☆47Updated last year
- A shiny application to visualize MCscan result☆31Updated last year
- Simple pileup-based variant caller☆79Updated 5 months ago