aqlaboratory / pnerfLinks
☆36Updated 5 years ago
Alternatives and similar repositories for pnerf
Users that are interested in pnerf are comparing it to the libraries listed below
Sorting:
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Reimplementation of the UniRep protein featurization model.☆107Updated 10 months ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 4 years ago
- Paratope Prediction using Deep Learning☆59Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- ☆31Updated 4 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆55Updated 2 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- Computes a molecular graph for protein structures.☆58Updated last month
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆20Updated 2 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Protein design and variant prediction using autoregressive generative models☆106Updated last year
- Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.☆20Updated 4 years ago
- ☆18Updated 7 years ago
- Protein design and variant prediction using autoregressive generative models☆23Updated 2 years ago