aqlaboratory / pnerfLinks
☆36Updated 6 years ago
Alternatives and similar repositories for pnerf
Users that are interested in pnerf are comparing it to the libraries listed below
Sorting:
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆40Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 11 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 3 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Autoregressive networks for protein☆38Updated 6 months ago
- ☆32Updated last week
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆19Updated 6 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- Computes a molecular graph for protein structures.☆58Updated last month
- ☆18Updated 7 years ago
- ☆35Updated 3 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 2 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- ☆20Updated 4 years ago
- Fast and accurate protein structure prediction☆54Updated 7 months ago