aqlaboratory / pnerf
☆35Updated 5 years ago
Alternatives and similar repositories for pnerf:
Users that are interested in pnerf are comparing it to the libraries listed below
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆19Updated 6 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Computes a molecular graph for protein structures.☆58Updated last week
- PyTorch library of layers acting on protein representations☆118Updated 10 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆86Updated last year
- Fast and accurate protein structure prediction☆52Updated 3 months ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 6 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Source code and examples for AlphaFold Unmasked☆62Updated 3 weeks ago
- ☆29Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆48Updated 2 years ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆57Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated last year
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆34Updated last week
- A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.☆17Updated 9 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated this week
- ☆39Updated this week