aqlaboratory / pnerfLinks
☆36Updated 6 years ago
Alternatives and similar repositories for pnerf
Users that are interested in pnerf are comparing it to the libraries listed below
Sorting:
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Reimplementation of the UniRep protein featurization model.☆107Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆98Updated 3 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 4 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆19Updated 7 years ago
- Computes a molecular graph for protein structures.☆58Updated this week
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆112Updated last year
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Updated 3 years ago
- ☆35Updated 3 years ago
- Autoregressive networks for protein☆38Updated 6 months ago
- Protein-ligand binding sites prediction toolkits☆21Updated 6 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Fast and accurate protein structure prediction☆54Updated 8 months ago
- ☆127Updated 4 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- ☆32Updated 3 weeks ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year