debbiemarkslab / EVzoom
Visually explore covariation in protein families
☆37Updated 5 years ago
Alternatives and similar repositories for EVzoom:
Users that are interested in EVzoom are comparing it to the libraries listed below
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- ☆36Updated 6 years ago
- Contact map alignment☆41Updated 4 years ago
- Fast and accurate protein structure prediction☆50Updated 2 months ago
- Pseudo Likelihood Maximization for protein in Julia☆50Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Evolutionary conservation estimation of residues or nucleotides☆37Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆57Updated this week
- Structural Bioinformatics Training Workshop & Hackathon 2017☆18Updated 7 years ago
- A Python platform for Structural Bioinformatics☆56Updated this week
- ☆20Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆56Updated 3 years ago
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- ☆28Updated 10 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated 3 months ago
- a collection of colabs useful for molecular biology☆31Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆108Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆16Updated 5 years ago
- A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.☆17Updated 9 years ago
- The DSSP building software☆41Updated last year
- Python package to manage protein structures and their annotations☆42Updated last year
- Convert PDB residues to their Uniprot equivalents☆17Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 3 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆25Updated 7 months ago