boscoh / pdbremix
analyse PDB files, run molecular-dynamics & analyse trajectories
☆61Updated 7 years ago
Alternatives and similar repositories for pdbremix:
Users that are interested in pdbremix are comparing it to the libraries listed below
- Dynamics PyMOL Plugin☆42Updated last year
- Pymol ScrIpt COllection (PSICO)☆59Updated 9 months ago
- Interactive Python notebooks for PDBe API training☆52Updated 3 months ago
- Set of useful HADDOCK utility scripts☆51Updated 8 months ago
- Framework for the rapid modeling glycans and glycoproteins.☆29Updated last year
- A simple Python library to generate model peptides☆82Updated 4 years ago
- Contact map analysis for biomolecules; based on MDTraj☆45Updated 4 months ago
- Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G pr…☆39Updated last week
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 4 months ago
- Calculation of interatomic interactions in molecular structures☆92Updated 8 months ago
- The DSSP building software☆43Updated last year
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆25Updated 3 weeks ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆79Updated 2 months ago
- Python implementation of the Ramachandran plot☆45Updated 5 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Calculation of interatomic interactions in molecular structures☆73Updated 3 years ago
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- A Python platform for Structural Bioinformatics☆56Updated last month
- A Python library for structural cheminformatics☆99Updated last week
- ☆85Updated last year
- A primer on statistical mechanics for biochemists☆46Updated 2 years ago
- ☆28Updated last year
- A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantl…☆22Updated 2 years ago
- A package for MD, Docking and Machine learning drug discovery pipeline☆44Updated 4 years ago
- A high level cheminformatics package for the Scientific Python stack, built on RDKit.☆64Updated 5 years ago
- Automated omics-scale protein modeling and simulation setup.☆52Updated 3 years ago
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated last month
- Functions to scrape GPCR data from the web.☆16Updated 3 years ago
- This repo is outdated. Please use https://github.com/pylelab/USalign instead☆16Updated 3 years ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆76Updated 11 months ago