A Python workflow to study protein-protein coevolution and interaction
β21Jun 30, 2017Updated 9 years ago
Alternatives and similar repositories for pycoevol
Users that are interested in pycoevol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved contact predictions using the recognition of protein like contact patterns.β14May 18, 2018Updated 8 years ago
- π¦ A Command Line Tool for downloading protein structures, sequences and MSAsβ10Nov 21, 2017Updated 8 years ago
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"β12Sep 22, 2019Updated 6 years ago
- scripts for analyzing molecular dynamics trajectories using VMDβ40May 28, 2015Updated 11 years ago
- β15Mar 25, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Modelβ15Nov 8, 2020Updated 5 years ago
- Heuristic energy-based cyclic peptide designβ15Feb 21, 2025Updated last year
- The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold proteβ¦β16Feb 16, 2024Updated 2 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarityβ14Dec 7, 2021Updated 4 years ago
- Code for "De novo molecular design with chemical language models"β13Nov 10, 2021Updated 4 years ago
- Explainable Data Science Courseβ14Oct 8, 2020Updated 5 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individuaβ¦β11Feb 21, 2018Updated 8 years ago
- scripts for parsing PDB, fasta, and GOβ16Oct 20, 2021Updated 4 years ago
- A client for the Ensembl REST API written in the Python programming languageβ29Aug 22, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modeling framework for eTRANSAFE projectβ13Aug 6, 2025Updated last year
- Bokeh tutorial, PyData Berlinβ10May 29, 2015Updated 11 years ago
- A light-weight PyTorch extension for equivariant deep learningβ18Feb 20, 2025Updated last year
- Tutorials for the InterMine Python web clientβ14Jun 1, 2022Updated 4 years ago
- RDKitδΈζζη¨β16Jun 21, 2020Updated 6 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR pβ¦β14Oct 5, 2021Updated 4 years ago
- 𧬠Analyzing compression algorithms for genomic sequencing dataβ12Feb 14, 2020Updated 6 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM filβ¦β11Sep 17, 2021Updated 4 years ago
- Pipeline for protein folding using PconsC and Rosettaβ18May 21, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Materials from the Intro to the RDKit tutorial at AIDD 2021β20Oct 19, 2021Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldXβ71Mar 9, 2026Updated 5 months ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!β18Jun 25, 2024Updated 2 years ago
- A convolutional neural network to predict PPI interactionsβ42Oct 9, 2018Updated 7 years ago
- Contact map analysis for biomolecules; based on MDTrajβ50May 9, 2026Updated 3 months ago
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithmsβ18Dec 15, 2021Updated 4 years ago
- A SNP Visualizer - Javascriptβ18Oct 22, 2014Updated 11 years ago
- PyTorch implementations of protein secondary structure prediction on CB513.β17Dec 30, 2018Updated 7 years ago
- Python utilities for handling Rosetta output and PDB filesβ16Sep 26, 2011Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Message Passing Neural Networks for Atomic/Bond Property Predictionβ20Dec 8, 2020Updated 5 years ago
- β22Aug 30, 2022Updated 4 years ago
- DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression saβ¦β19Jun 7, 2018Updated 8 years ago
- Tautomer ratios in solutionβ28Sep 20, 2021Updated 4 years ago
- Derive ΞG for single residues from HDX-MS dataβ32Mar 30, 2026Updated 5 months ago
- Solvent Accessible Surface Areas of Biomolecules and their Complexesβ19Jul 26, 2026Updated last month
- Integrating influenza antigenic dynamics with molecular evolutionβ12May 28, 2015Updated 11 years ago