biomadeira / pycoevol
A Python workflow to study protein-protein coevolution and interaction
☆21Updated 7 years ago
Alternatives and similar repositories for pycoevol
Users that are interested in pycoevol are comparing it to the libraries listed below
Sorting:
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Updated 7 years ago
- A platform to do RNA science☆27Updated 4 years ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29Updated 6 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 5 months ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- Peptide library design☆23Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- ☆29Updated last year
- A Python platform for Structural Bioinformatics☆56Updated last month
- A domain parser for Alphafold models☆36Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆26Updated 9 months ago
- Singularity recipe for AlphaFold☆36Updated 6 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆33Updated 4 years ago
- ☆22Updated last year
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- PSIPRED Protein Secondary Structure Predictor☆54Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆84Updated last year
- Interactive Python notebooks for PDBe API training☆52Updated last week
- ☆36Updated 6 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Contact Prediction ToolKit☆22Updated 2 years ago
- ☆40Updated 3 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆59Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Fast protein domain structure embedding+search tool☆19Updated this week