biomadeira / pycoevol
A Python workflow to study protein-protein coevolution and interaction
☆21Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for pycoevol
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Updated 7 years ago
- A platform to do RNA science☆27Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆51Updated this week
- scripts and facilities for in-silico mutagenesis with FoldX☆51Updated this week
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆34Updated 4 months ago
- ☆37Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- DeepContact Software☆26Updated 6 years ago
- Interactive Python notebooks for PDBe API training☆45Updated last week
- ☆20Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆33Updated last month
- Singularity recipe for AlphaFold☆33Updated last week
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated last year
- Convert PDB residues to their Uniprot equivalents☆15Updated 4 years ago
- A Python platform for Structural Bioinformatics☆54Updated 9 months ago
- ☆27Updated 6 months ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆28Updated 6 years ago
- a collection of colabs useful for molecular biology☆27Updated 8 months ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆78Updated 8 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated 9 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆72Updated 2 months ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆22Updated 3 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year