Alternatives and similar repositories for zip-tree

Users that are interested in zip-tree are comparing it to the libraries listed below

• davidecenzato / PFP-eBWT

  View on GitHub
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Jul 14, 2025Updated 7 months ago
• gvinciguerra / BlockEpsilonTree

  View on GitHub
  🌳 A compressed rank/select dictionary exploiting approximate linearity and repetitiveness.
  ☆15Jun 28, 2022Updated 3 years ago
• drnatebrown / r-index-f

  View on GitHub
  R-Index-F Library for Pattern Matching
  ☆12Aug 8, 2024Updated last year
• espindola / cthulhu

  View on GitHub
  ☆12Oct 15, 2023Updated 2 years ago
• jermp / opt_vbyte

  View on GitHub
  Optimal partitioning of Variable-Byte codes for better compression and fast decoding.
  ☆17Nov 10, 2021Updated 4 years ago
• itomomoti / OnlineRlbwt

  View on GitHub
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆14May 11, 2018Updated 7 years ago
• edawson / svaha

  View on GitHub
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Mar 6, 2024Updated last year
• splatlab / rankselect

  View on GitHub
  Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences
  ☆15Aug 7, 2018Updated 7 years ago
• stringologytimes / StringologyTimes

  View on GitHub
  Paper Collection for Stringologists
  ☆17Feb 7, 2026Updated last week
• jermp / sshash

  View on GitHub
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆93Updated this week
• tlemane / kmtricks

  View on GitHub
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆86Dec 15, 2025Updated last month
• jermp / psds

  View on GitHub
  Efficient Prefix-Sum data structures in C++.
  ☆26Oct 1, 2023Updated 2 years ago
• anchorhash / cpp-anchorhash

  View on GitHub
  AnchorHash - A Scalable Consistent Hash
  ☆26Dec 5, 2021Updated 4 years ago
• langmead-lab / vargas

  View on GitHub
  ☆24Aug 25, 2025Updated 5 months ago
• jermp / interpolative_coding

  View on GitHub
  A flexible and efficient C++ implementation of the Binary Interpolative Coding algorithm.
  ☆31Jan 8, 2023Updated 3 years ago
• xxsds / DYNAMIC

  View on GitHub
  Dynamic succinct/compressed data structures
  ☆115Dec 17, 2025Updated last month
• nicolaprezza / r-index

  View on GitHub
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆68May 31, 2023Updated 2 years ago
• viktorleis / vmcache

  View on GitHub
  ☆81Sep 9, 2025Updated 5 months ago
• mugan86 / android-kotlin-qr-scanner

  View on GitHub
  Example to read qr code with kotlin
  ☆10Jul 24, 2018Updated 7 years ago
• gvinciguerra / la_vector

  View on GitHub
  🔶 Compressed bitvector/container supporting efficient random access and rank queries
  ☆46Sep 4, 2024Updated last year
• DataBiosphere / data-browser

  View on GitHub
  ☆11Updated this week
• xatellite / OpenLinePlanner

  View on GitHub
  Prototype public schematic transport lines in seconds
  ☆12Nov 11, 2023Updated 2 years ago
• pepipost / BIMI-official

  View on GitHub
  ✨ Brand Indicators for Message Identification or BIMI ( 📢 pronounced: Bih-mee) is an emerging email 📧 specification that enables the us…
  ☆10Mar 6, 2024Updated last year
• ultimatepp / UppHub

  View on GitHub
  UppHub is the repository that serves as the official global registry for U++ distributed packages. Each package provides additional funct…
  ☆12Nov 4, 2025Updated 3 months ago
• qwangmsk / MLCS-Algorithms

  View on GitHub
  A fast heuristic search algorithm for finding the longest common subsequence of multiple strings
  ☆10Nov 22, 2023Updated 2 years ago
• weiran-zhao / java_cs61b

  View on GitHub
  self study java, through cs61b (http://www.cs.berkeley.edu/~jrs/61b/)
  ☆10Jul 9, 2013Updated 12 years ago
• aaronmck / SC_GESTALT

  View on GitHub
  GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing
  ☆13Jan 26, 2020Updated 6 years ago
• rossanoventurini / Variable-BMW

  View on GitHub
  ☆13Nov 15, 2017Updated 8 years ago
• pdimov / mustache

  View on GitHub
  Boost.Mustache
  ☆10Jan 31, 2023Updated 3 years ago
• jnalanko / syotti

  View on GitHub
  Minimum Bait Cover Toolkit Syotti.
  ☆13Jan 22, 2025Updated last year
• nalinbhardwaj / min-cut-paper

  View on GitHub
  A Simple Algorithm for Minimum Cuts in Near-Linear Time (SWAT '20)
  ☆12Apr 24, 2020Updated 5 years ago
• jltsiren / gbwt-rs

  View on GitHub
  GBWT in Rust
  ☆45Dec 26, 2025Updated last month
• harald-lang / tree-encoded-bitmaps

  View on GitHub
  ☆39Jun 20, 2020Updated 5 years ago
• krobelus / git-branchstack

  View on GitHub
  Efficiently manage Git branches without leaving your local branch
  ☆54Feb 7, 2025Updated last year
• WojciechMula / ternarylogiccli

  View on GitHub
  CLI utilty to work out proper constants for vpternlogic instruction
  ☆13Jan 22, 2023Updated 3 years ago
• cschin / multi-tabix

  View on GitHub
  multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
  ☆10Jan 7, 2022Updated 4 years ago
• KaminariOS / b-epsilon-tree

  View on GitHub
  Bε tree implementation
  ☆12Dec 6, 2023Updated 2 years ago
• raphael-group / multibreak-sv

  View on GitHub
  MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…
  ☆12Jul 19, 2016Updated 9 years ago
• crharshaw / GSWDesign.jl

  View on GitHub
  An efficient method for sampling from the Gram--Schmidt Walk Design.
  ☆13Sep 16, 2023Updated 2 years ago