kurpicz / saca-bench
Collection of Suffix Array Construction Algorithms (SACAs)
☆29Updated 6 years ago
Alternatives and similar repositories for saca-bench:
Users that are interested in saca-bench are comparing it to the libraries listed below
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- Implementation of the sacabench framework☆16Updated 3 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆105Updated 10 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆62Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated last year
- Dynamic succinct/compressed data structures☆112Updated 10 months ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 6 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Succinct Data Structure Library 3.0☆94Updated 6 months ago
- A tool for merging large BWTs☆26Updated 4 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 2 years ago
- Paper Collection for Stringologists☆17Updated 4 months ago
- R-Index-F Library for Pattern Matching☆13Updated 7 months ago
- libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induce…☆200Updated last week
- A cheatsheet for most common Stringology tasks☆15Updated 3 years ago
- Bit packed vector of integral values☆27Updated 2 months ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆43Updated 6 months ago
- Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]☆15Updated 3 years ago
- TU DOrtmund lossless COMPression framework☆17Updated 6 months ago
- Parallel Lightweight Suffix Array Algorithm.☆18Updated 8 years ago
- Parallel Wavelet Tree and Wavelet Matrix Construction☆26Updated last year
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- A space-efficient compressor based on the Re-Pair grammar☆11Updated 7 years ago
- A lightweight suffix-sorting library enhanced with LCP construction☆11Updated 5 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated last month
- Succinct Data Structure Library☆106Updated 11 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated 5 months ago
- Compact Data Structures Library☆124Updated 10 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆63Updated 10 months ago
- Compact Data Structures Library☆98Updated 2 years ago