vanessajurtz / lasagne4bio
☆107Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for lasagne4bio
- For anyone who are eager to applying deep learning in bioinformatics!☆120Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ☆83Updated 3 years ago
- Python interface to running command-line and web-based MHC binding predictors☆89Updated last month
- Predicting gene expression levels from genomic sequences☆49Updated 4 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆113Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- predicting expression effects of human genome variants ab initio from sequence☆119Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 4 years ago
- ☆52Updated 3 years ago
- ☆58Updated last year
- ☆38Updated 11 months ago
- ☆56Updated 7 years ago
- 3D hotspot mutation proximity analysis tool☆45Updated last year
- Model zoo for genomics☆165Updated 3 months ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆44Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆10Updated last month
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆110Updated 9 months ago
- A deep learning package for predicting TF binding☆41Updated 4 years ago
- Code for 5UTR project☆24Updated last year
- ☆50Updated 11 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- Core code for the DeepHF prediction tool☆35Updated 5 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆132Updated 2 weeks ago
- A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference☆58Updated 6 years ago