databio / pararead
Simplifies parallel processing of DNA sequencing reads
☆9Updated 4 months ago
Alternatives and similar repositories for pararead:
Users that are interested in pararead are comparing it to the libraries listed below
- Bedfile perturbation tool☆17Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Differential Mutation Analysis☆11Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- End-guided RNA assembler☆15Updated 3 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆24Updated 4 years ago
- ☆12Updated 2 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Useful tools for working with Salmon output☆37Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Visualization tool for temporal clonal evolution.☆16Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago