Alternatives and similar repositories for PubData

Users that are interested in PubData are comparing it to the libraries listed below

• NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3
  ☆28Updated 7 years ago
• kwanjeeraw / grinn
  a Graph database and R package for omic data integration
  ☆20Updated 9 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• pamelarussell / github-bioinformatics
  Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
  ☆33Updated 6 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 8 years ago
• burkesquires / immunology-informatics
  Immunology Informatics - Big Data Analysis in Immunology - Tutorials
  ☆23Updated 8 years ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago
• IOR-Bioinformatics / PCSF
  ☆14Updated 6 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• ceiron61 / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆18Updated 7 years ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 2 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated this week
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆66Updated 5 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆37Updated 4 years ago
• dgrapov / MetaMapR
  Network mapping tool for metabolomics + data.
  ☆53Updated 9 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆44Updated last month
• NCBI-Hackathons / rnaseqview
  RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon
  ☆37Updated 8 years ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆23Updated 9 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• Bohdan-Khomtchouk / fastheatmap
  Super high performance interactive heatmap software
  ☆31Updated 6 years ago
• biothings / mygene.R
  A R Bioconductor package for accessing MyGene.info services
  ☆11Updated 7 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 3 years ago
• KHP-Informatics / DNAscan
  DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring ve…
  ☆43Updated 3 years ago