mirabdi / PDAnalysisLinks
☆33Updated 2 years ago
Alternatives and similar repositories for PDAnalysis
Users that are interested in PDAnalysis are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- ☆47Updated last week
- Structure prediction and design of proteins with noncanonical amino acids☆117Updated last week
- Modelling of Large Protein Complexes☆39Updated 6 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆60Updated last week
- ☆70Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆41Updated 7 months ago
- mdml: Deep Learning for Molecular Simulations☆50Updated 8 months ago
- Kuhlman Lab Installation of AlphaFold3☆39Updated 4 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆80Updated 11 months ago
- ☆81Updated 3 weeks ago
- Modelling protein conformational landscape with Alphafold☆54Updated 5 months ago
- ☆19Updated 10 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 3 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆38Updated 8 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Updated 2 years ago
- ☆37Updated 2 years ago
- Files and utilities for protein-emoji☆27Updated 3 years ago
- protein structure generation with sparse all-atom denoising models☆59Updated last month
- Some scripts that I keep using over and over.☆21Updated 7 months ago
- ☆43Updated 2 years ago
- ☆21Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated 2 years ago
- Convert coarse-grained protein structure to all-atom model☆49Updated 8 months ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆36Updated last month
- Source code and examples for AlphaFold Unmasked☆76Updated 2 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆66Updated last month