This repo contains the collection of codes to find designer interfacial mutations
☆17Sep 4, 2023Updated 2 years ago
Alternatives and similar repositories for prot-on
Users that are interested in prot-on are comparing it to the libraries listed below
Sorting:
- development repository for PyInteraph2☆22Mar 26, 2025Updated 11 months ago
- An open-source library for the analysis of protein interactions.☆33Dec 5, 2021Updated 4 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- E(3) equivariant graph neural network for PPI site prediction☆10Sep 18, 2023Updated 2 years ago
- A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.☆55Sep 6, 2022Updated 3 years ago
- ☆10Apr 1, 2022Updated 3 years ago
- ☆12Feb 17, 2023Updated 3 years ago
- ☆56Feb 16, 2026Updated last month
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆18Oct 6, 2024Updated last year
- The QED (Quantitative Estimation of Drug-likeness) molecular descriptor to use in combination with RDKit☆14Dec 12, 2022Updated 3 years ago
- predict stability change upon mutation☆30Jun 28, 2024Updated last year
- ☆11Aug 3, 2023Updated 2 years ago
- Software for the prediction of FRET data from conformational ensembles.☆24Dec 19, 2024Updated last year
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- Extract the PAE & pLDDT value of Alphafold2 from .pkl to .png, .csv & .pdb file.☆22Jan 2, 2022Updated 4 years ago
- ☆11Apr 25, 2021Updated 4 years ago
- Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site☆12Jun 23, 2023Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16May 16, 2019Updated 6 years ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆15Jun 19, 2021Updated 4 years ago
- pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of str…☆28Aug 20, 2020Updated 5 years ago
- A Python package to calculate, visualize and analyze correlation maps of proteins.☆44Mar 14, 2026Updated last week
- ☆13May 26, 2022Updated 3 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆28Jan 8, 2024Updated 2 years ago
- ☆22Dec 15, 2022Updated 3 years ago
- A Christmas tree protein☆19Dec 27, 2024Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- Models trained on the SPICE dataset☆10Sep 23, 2022Updated 3 years ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆15Dec 13, 2022Updated 3 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- ☆15Sep 5, 2025Updated 6 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- SIMD instructions for faster distance calculations.☆25Oct 13, 2025Updated 5 months ago
- Implementation of the TintiNet architecture for Julia☆17Mar 1, 2024Updated 2 years ago
- ☆10Mar 10, 2023Updated 3 years ago
- Physical energy function for protein sequence design☆38May 6, 2023Updated 2 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- Protein-protein binding affinity benchmark☆16Feb 14, 2025Updated last year
- Non-sequential structural alignment program for protein structure☆19Oct 26, 2024Updated last year