software-gardening / almanackLinks
An open-source handbook of applied guidance and tools for sustainable software development and maintenance.
☆23Updated last week
Alternatives and similar repositories for almanack
Users that are interested in almanack are comparing it to the libraries listed below
Sorting:
- Schema.org Data Models for HTAN☆15Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆60Updated last month
- Interface to the Bioformats Java library☆13Updated 3 weeks ago
- ☆18Updated last month
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated 3 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 5 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆20Updated this week
- Read fcs files.☆12Updated last month
- Compendium of tools for the Imaging Platform☆15Updated last month
- General, open-standard schema for cell annotations☆16Updated 6 months ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆235Updated 3 weeks ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆148Updated 3 weeks ago
- This repo is for the metadata schemas associated with the HCA☆69Updated last week
- ☆29Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆20Updated 3 weeks ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆18Updated 3 weeks ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated 3 weeks ago
- Streaming directly to Zarr on the file system or S3☆24Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- Framework for image and flow cytometry analysis☆32Updated last week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆29Updated 3 weeks ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated 9 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated 2 months ago
- An introduction to OME-Zarr for big bioimaging data☆23Updated this week
- Jupyter Notebooks for the Image Data Resource☆19Updated last month
- Efficient data structures and IO for whole slide image analysis☆17Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago