Alternatives and similar repositories for almanack

Users that are interested in almanack are comparing it to the libraries listed below

• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆67Updated this week
• cellannotation / cell-annotation-schema
  General, open-standard schema for cell annotations
  ☆16Updated last month
• TileDB-Inc / TileDB-BioImaging
  Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
  ☆18Updated 4 months ago
• ncihtan / data-models
  Schema.org Data Models for HTAN
  ☆15Updated 3 months ago
• Sage-Bionetworks / schematic
  Package for biomedical data model and metadata ingress management
  ☆26Updated last week
• laminlabs / bionty-base
  Access public biological ontologies.
  ☆16Updated last year
• fair-research / bdbag
  Big Data Bag Utilities
  ☆50Updated 2 months ago
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆18Updated this week
• chanzuckerberg / software-mentions
  ☆68Updated 2 years ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆15Updated last week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆77Updated last month
• hms-dbmi / Drug_Explorer
  Interactive & explainable GNN for drug repurposing
  ☆12Updated last year
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated last week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆51Updated this week
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated 3 weeks ago
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆39Updated last week
• laminlabs / readfcs
  Read fcs files.
  ☆13Updated 6 months ago
• vitessce / vitessce
  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
  ☆217Updated this week
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆109Updated this week
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆12Updated 5 months ago
• visdesignlab / upset2
  UpSet - Visualizing Intersecting Sets
  ☆69Updated this week
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• linnarsson-lab / loom-viewer
  Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
  ☆36Updated 7 months ago
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆117Updated last week
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated last year
• German-BioImaging / omero-rdf
  A plugin for exporting RDF from OMERO
  ☆13Updated 2 months ago
• broadinstitute / monorepo
  Compendium of tools for the Imaging Platform
  ☆13Updated last week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆47Updated last week
• MaayanLab / FAIRshake
  ☆10Updated 9 months ago