cytodata / cytodata-hackathon-2018

Related projects ⓘ

Alternatives and complementary repositories for cytodata-hackathon-2018

• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆26Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆49Updated 6 months ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆17Updated 7 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 5 years ago
• michaellee1 / CellSeg
  ☆21Updated last year
• sunericd / dynamicviz
  ☆58Updated last year
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆26Updated last year
• brikeats / Cell-Tracking
  Python scripts for tracking cells in fluorescent microscopy.
  ☆11Updated 6 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆35Updated 2 years ago
• cooperlab / TCGAIntegrator
  Python utilities for building integrated views of TCGA data.
  ☆32Updated 6 years ago
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆43Updated last year
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 4 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated last year
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 2 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆20Updated 4 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• AllenCellModeling / AllenCellModeling.github.io
  Data stories
  ☆10Updated 6 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆115Updated 2 years ago
• KlugerLab / deepcytof
  ☆17Updated 7 years ago
• IBM / depiction
  interpret deep learning models in a framework-independent fashion
  ☆41Updated last year
• bglnelissen / slideToolkit
  slideToolkit: a free toolset for analyzing full size virtual histology slides
  ☆11Updated 5 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆57Updated 3 years ago
• vanvalenlab / deepcell-toolbox
  Data processing tools associated with deepcell
  ☆10Updated last year
• nolanlab / REDSEA
  ☆17Updated 7 months ago
• luisvalesilva / wsipre
  Handling whole-slide images with region-level annotations.
  ☆9Updated 5 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆48Updated last month
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆29Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆25Updated last week