The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
☆110Apr 5, 2022Updated 4 years ago
Alternatives and similar repositories for bioinfo-combio
Users that are interested in bioinfo-combio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Know more about Shirley Liu lab at☆13Jan 27, 2026Updated 9 months ago
- Model-based Analysis of Protein Degradability☆12Aug 30, 2021Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 7 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 4 months ago
- Bioinformatics analysis scripts, workflows, general code examples☆57Feb 19, 2021Updated 5 years ago
- Repository for all the labs for Spring 2021☆118Apr 20, 2021Updated 5 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆151Oct 28, 2023Updated 3 years ago
- ☆33Nov 9, 2022Updated 3 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 11 months ago
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for all labs for STAT115 for 2020☆56Apr 15, 2020Updated 6 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆41Feb 8, 2026Updated 8 months ago
- Read HOMER motif analysis output in R.☆18Mar 1, 2018Updated 8 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆75Oct 10, 2024Updated 2 years ago
- Unix, R and python tools for genomics and data science☆1,406Aug 25, 2025Updated last year
- FastPCA using PRIMME☆10Dec 16, 2020Updated 5 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- just get your chrom sizes☆17Mar 17, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- TCR and BCR assembly from RNA-seq data☆367Sep 25, 2026Updated last month
- We provided a step-by-step guide for performing colocalization analysis using the coloc package in R.☆11Nov 17, 2023Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆29Sep 23, 2025Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 7 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- Short lessons from FAS Informatics coffee hour☆161Jul 6, 2023Updated 3 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Imputation workflow for low coverage whole genome sequencing data☆10Jan 8, 2025Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆232Feb 4, 2026Updated 8 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago