zaritskylab / DISCOVERLinks
Visual interpretability of image-based classification models by generative latent space disentanglement
☆12Updated 2 months ago
Alternatives and similar repositories for DISCOVER
Users that are interested in DISCOVER are comparing it to the libraries listed below
Sorting:
- Codebase for "A Foundation Model for Cell Segmentation"☆101Updated 2 weeks ago
- Easy Volumetric Segmentation with Deep Learning☆26Updated this week
- Stain normalization tools for histological analysis and computational pathology☆151Updated 7 months ago
- Segment Anything for Microscopy☆573Updated last week
- PAthological QUpath Obsession - QuPath and Python conversations☆119Updated 8 months ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆314Updated last month
- Virtual Alignment of pathoLogy Image Series☆171Updated last month
- ☆89Updated 2 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆100Updated last week
- ☆91Updated 3 weeks ago
- ☆176Updated last month
- QuPath extension for Segment Anything Model (SAM)☆117Updated 3 weeks ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 6 months ago
- Evaluation framework for oncology foundation models (FMs)☆114Updated last week
- Segment Anything for Histopathology☆40Updated 2 months ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆457Updated this week
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆206Updated 2 weeks ago
- HistoQC is an open-source quality control tool for digital pathology slides☆301Updated 3 weeks ago
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated this week
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆157Updated last year
- Ressources of histopathology datasets☆449Updated last month
- Python code to read/write .annotation files from Halo☆10Updated 6 months ago
- ☆197Updated 2 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆258Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆177Updated last week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆80Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Interpretable Gland-Graph Networks☆22Updated last year