zaritskylab / DISCOVERLinks
Visual interpretability of image-based classification models by generative latent space disentanglement
☆12Updated 7 months ago
Alternatives and similar repositories for DISCOVER
Users that are interested in DISCOVER are comparing it to the libraries listed below
Sorting:
- Codebase for "A Foundation Model for Cell Segmentation"☆174Updated 2 months ago
- Stain normalization tools for histological analysis and computational pathology☆174Updated 2 months ago
- Easy Volumetric Segmentation with Deep Learning☆28Updated 2 weeks ago
- ☆95Updated 8 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 2 months ago
- Virtual Alignment of pathoLogy Image Series☆205Updated 7 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆115Updated last week
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆504Updated this week
- Segment Anything for Histopathology☆58Updated 4 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆358Updated 6 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Updated 2 months ago
- ☆209Updated this week
- Segment Anything for Microscopy☆647Updated this week
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated 2 years ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆119Updated this week
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Updated this week
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- MESCnn: MESC classification by neural network☆10Updated 2 years ago
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆106Updated 4 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆236Updated last week
- Unsupervised Instance Segmentation in Microscopy☆26Updated last year
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆27Updated 3 years ago
- ☆36Updated 10 months ago
- Evaluation framework for oncology foundation models (FMs)☆147Updated last week
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆164Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year