nadeemlab / DeepLIIFLinks
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
☆215Updated last month
Alternatives and similar repositories for DeepLIIF
Users that are interested in DeepLIIF are comparing it to the libraries listed below
Sorting:
- Virtual Alignment of pathoLogy Image Series☆185Updated 4 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆107Updated 9 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆83Updated last year
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- Tools to build deep learning pipelines.☆109Updated 11 months ago
- Stain normalization tools for histological analysis and computational pathology☆155Updated 9 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆227Updated 2 years ago
- ☆56Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- ☆57Updated 3 years ago
- ☆65Updated last year
- List of pathology feature extractors and foundation models☆154Updated 4 months ago
- First commit☆63Updated 3 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆141Updated 4 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆64Updated last year
- DeeperHistReg - Source Code☆75Updated last year
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- ☆36Updated 7 months ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆328Updated 3 months ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Toolkit for large-scale whole-slide image processing.☆393Updated last month
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated this week
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated 10 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆322Updated 3 years ago
- Solid Tumor Associative Modeling in Pathology☆92Updated this week
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆94Updated 10 months ago