collinwa / MCFA
☆18Updated last year
Alternatives and similar repositories for MCFA:
Users that are interested in MCFA are comparing it to the libraries listed below
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- University of Cambridge PhD thesis☆15Updated 4 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 7 months ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆27Updated last month
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 5 months ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- RNAseq pipeline based on snakemake☆22Updated last year
- ☆19Updated last month
- ☆27Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Statistical power studies for multi-omics experiments.☆30Updated last week
- ☆42Updated 3 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Motif manipulation functions for R.☆26Updated 2 months ago
- R package for testing and visualizing gene list overlaps☆18Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆12Updated last year
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆20Updated 4 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last month
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago