cmdcolin / jbrowse-plugin-mafviewerLinks
A viewer for multiple alignment format (MAF) files in JBrowse 2
☆14Updated this week
Alternatives and similar repositories for jbrowse-plugin-mafviewer
Users that are interested in jbrowse-plugin-mafviewer are comparing it to the libraries listed below
Sorting:
- COsine SImilarity-based Genotyper using pangenomes☆25Updated last week
- A Hi-C scaffolding method☆22Updated 4 years ago
- Phasing reads with secondary alignments☆21Updated last year
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Consensus genome annotation using OMA☆31Updated 2 weeks ago
- Better Alignments with Translated HMMER☆24Updated this week
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- ☆16Updated last year
- The MafFilter genome alignment processor☆19Updated 3 weeks ago
- FastK based version of Merqury☆30Updated last week
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 3 months ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 11 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 7 months ago
- ☆17Updated last week
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- TD2☆31Updated 2 weeks ago