Alternatives and similar repositories for jbrowse-plugin-mafviewer:

Users that are interested in jbrowse-plugin-mafviewer are comparing it to the libraries listed below

• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆17Updated 3 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated this week
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆13Updated last month
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆9Updated 6 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆17Updated 6 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆16Updated 7 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 4 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆23Updated 4 months ago
• davidebolo1993 / cosigt
  ☆17Updated 2 weeks ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 6 months ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated 10 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 11 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated 2 years ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• linguoliang / puzzle-hi-c
  ☆15Updated 4 months ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆12Updated 6 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 10 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 2 weeks ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago