cmdcolin / jbrowse-plugin-mafviewerLinks
A viewer for multiple alignment format (MAF) files in JBrowse 2
☆12Updated last week
Alternatives and similar repositories for jbrowse-plugin-mafviewer
Users that are interested in jbrowse-plugin-mafviewer are comparing it to the libraries listed below
Sorting:
- SINE annotation tool for plant genomes☆17Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Identification of conserved non-coding sequences in plants☆20Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated this week
- Consensus genome annotation using OMA☆24Updated this week
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- ☆16Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 2 weeks ago
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆12Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated last month
- ☆20Updated last week
- Study of TE evolution in a population of genomes☆9Updated last year
- The MafFilter genome alignment processor☆18Updated last month
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆15Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- plot genome alignment synteny☆21Updated 5 years ago