maweigert / spimagineView external linksLinks
GPU accelerated volume rendering / processing in Python
☆120Mar 21, 2019Updated 6 years ago
Alternatives and similar repositories for spimagine
Users that are interested in spimagine are comparing it to the libraries listed below
Sorting:
- GPU accelerated image/volume processing in Python☆113Updated this week
- ☆23Mar 26, 2021Updated 4 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Smooth 2D manifold extraction from 3D image stack☆22Mar 18, 2018Updated 7 years ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆39Sep 29, 2018Updated 7 years ago
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 3 years ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Mar 2, 2019Updated 6 years ago
- A hub to start the next generation of Microscope Control Software☆59Jan 7, 2021Updated 5 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆59Jul 18, 2025Updated 6 months ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Jun 20, 2023Updated 2 years ago
- High quality visualization for volumetric image data☆56Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Feb 2, 2026Updated last week
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- GPU-accelerated image processing for everyone☆55Jul 4, 2024Updated last year
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- Image restoration for fluorescence microscopy☆326Dec 8, 2025Updated 2 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- ☆10Nov 29, 2024Updated last year
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 2 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 8 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 10 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- TensorFlow-based classifier for microscope image focus quality.☆18Jun 14, 2022Updated 3 years ago
- ☆12Jan 10, 2021Updated 5 years ago
- Main repository for DIVE☆17Feb 25, 2022Updated 3 years ago
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago