Alternatives and similar repositories for sc-GC

Users that are interested in sc-GC are comparing it to the libraries listed below

• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆51Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• yqq-chen / CRC_ICB
  ☆32Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 4 months ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆69Updated 2 years ago
• bio-Pixel / panVC
  ☆54Updated last year
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• hedyBao / HNSCC_scRNA
  ☆38Updated last year
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated last year
• ma-jq / B
  ☆28Updated last year
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆23Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆24Updated 2 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆128Updated last year
• Chuxj / CRC-atlas
  ☆31Updated last year
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆64Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 8 months ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆51Updated last month
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆29Updated last year
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 6 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆27Updated 3 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆86Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated 2 years ago
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆73Updated 2 years ago
• QiangShiPKU / CoVarNet
  ☆48Updated 3 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆29Updated 2 weeks ago