Alternatives and similar repositories for sc-GC

Users that are interested in sc-GC are comparing it to the libraries listed below

• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆49Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago
• yqq-chen / CRC_ICB
  ☆32Updated last year
• bio-Pixel / panVC
  ☆51Updated last year
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 4 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆125Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated 2 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆109Updated 4 months ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated 2 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated 10 months ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆31Updated 6 months ago
• hedyBao / HNSCC_scRNA
  ☆37Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated last year
• ma-jq / B
  ☆26Updated last year
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆61Updated 2 years ago
• Chuxj / CRC-atlas
  ☆31Updated last year
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated last month
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆83Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 7 months ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆23Updated 2 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 6 months ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆25Updated last year
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆70Updated 2 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago
• wagnerlab-berkeley / Compass
  ☆30Updated 5 months ago