vanOpijnenLab / MAGenTA
☆11Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for MAGenTA
- Convert a Genbank flat file to an NCBI ptt file☆17Updated last year
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- ☆35Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- A program for detection of tRNA genes☆56Updated 2 years ago
- ☆27Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 4 years ago
- ☆23Updated 6 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆25Updated 8 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Rank-based Gene Ontology analysis of gene expression data☆39Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- A reference viral database (RVDB)☆26Updated 5 years ago
- Automatically exported from code.google.com/p/prottest3☆34Updated 6 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year