vanOpijnenLab / MAGenTA
☆11Updated 7 years ago
Alternatives and similar repositories for MAGenTA:
Users that are interested in MAGenTA are comparing it to the libraries listed below
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- ☆35Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- ☆28Updated 4 years ago
- An R package designed for drawing gene arrow maps☆72Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ☆23Updated 6 years ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 6 months ago
- A catalogue of available long read sequencing data analysis tools☆77Updated 2 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- ☆68Updated 2 weeks ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- gutSMASH☆53Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 6 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- BEAV: Bacterial Element Annotation reVamped☆62Updated 4 months ago
- Automatic Assembly For The Fungi☆19Updated 2 months ago