vanOpijnenLab / MAGenTALinks
☆11Updated 8 years ago
Alternatives and similar repositories for MAGenTA
Users that are interested in MAGenTA are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An R package designed for drawing gene arrow maps☆88Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- gutSMASH☆55Updated 9 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- ☆35Updated 2 years ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Updated 2 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- ☆27Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆77Updated last week
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 6 years ago
- A catalogue of available long read sequencing data analysis tools☆78Updated this week
- Scripts and libraries for Environmental Genomics☆38Updated 7 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 8 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Development version of Easyfig☆100Updated last year
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago