Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
☆264Apr 12, 2022Updated 4 years ago
Alternatives and similar repositories for bioinformatics
Users that are interested in bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight workflows in bioinformatics:☆24Nov 5, 2014Updated 11 years ago
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Oct 1, 2013Updated 12 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Feature Annotation Location Description Ontology☆34Jan 21, 2020Updated 6 years ago
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages☆38Oct 5, 2010Updated 15 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Dec 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- ☆43Apr 20, 2016Updated 10 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 12 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- Bioinformatics containers☆808Jul 7, 2026Updated last month
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 11 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- ☆19Nov 2, 2018Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 months ago
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Jun 19, 2026Updated last month
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Official documents of the Open Bioinformatics Foundation☆42Jun 11, 2026Updated last month
- De novo transcriptome assembler for short reads☆65May 31, 2026Updated 2 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A curated list of awesome Bioinformatics libraries and software.☆4,223Apr 7, 2026Updated 4 months ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago