The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
☆92Oct 13, 2026Updated this week
Alternatives and similar repositories for single-cell-data-portal
Users that are interested in single-cell-data-portal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hosted version of cellxgene☆21Oct 9, 2026Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 months ago
- Documentation for the cellxgene product☆18Sep 13, 2022Updated 4 years ago
- Code and documentation for the curation of cellxgene datasets☆59Updated this week
- An interactive explorer for single-cell transcriptomics data☆787Sep 29, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆134Sep 8, 2026Updated last month
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆70Dec 3, 2025Updated 10 months ago
- 2021 Science Design System Component Library☆37Updated this week
- CZ CELLxGENE Discover Census☆128Aug 4, 2026Updated 2 months ago
- Convert between AnnData and SingleCellExperiment☆154Oct 6, 2026Updated last week
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Fast streams for block gzip files.☆15Nov 11, 2025Updated 11 months ago
- ☆28May 16, 2025Updated last year
- Read fcs files.☆11Nov 13, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Sep 1, 2023Updated 3 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 8 months ago
- Manage biological ontologies.☆27Oct 7, 2026Updated last week
- ☆44Oct 20, 2023Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 3 years ago
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated 7 months ago
- Tutorials for multimodal omics data analysis☆20Feb 28, 2025Updated last year
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆22Jun 12, 2023Updated 3 years ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- starfish: unified pipelines for image-based transcriptomics☆252Oct 8, 2026Updated last week
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- Source code of the Bgee pipeline used to build the Bgee database☆12Oct 5, 2026Updated last week
- Pairwise Hierarchical Model☆21Mar 11, 2022Updated 4 years ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆76Oct 5, 2026Updated last week
- Reference mapping for single-cell genomics☆413Jun 26, 2026Updated 3 months ago
- Single-cell Case Control Analysis☆59Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell exploratory data analysis for RNA-Seq☆41Apr 24, 2021Updated 5 years ago
- Spatial and multiomic visualization and analysis library☆76Updated this week
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- Cookiecutter template for MCP server development with FastMCP☆12Nov 15, 2025Updated 11 months ago
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 5 years ago
- ☆12Sep 1, 2026Updated last month
- Simple scVI implementation☆13Updated this week